Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D16
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.70 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 PRSCCVRFSRSTSWSPGLRCRKTASCSSRCRILKFGLCQI-YQCP 412
           PR   +  S ST+ S    CR  A C + C    F  C     CP
Sbjct: 719 PRGVAI-VSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCP 762


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 335 GGPGSMKYSVKTEHNRTVAAREDPGV 258
           GGP S+K  V+T H+ T   R + G+
Sbjct: 445 GGPLSLKNKVETTHSGTSLFRINLGI 470


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 77  GTSAIYTNISLLAIAAWVAICIMN 6
           G   ++T I L+ ++ W+ +C++N
Sbjct: 313 GKYLLFTMI-LVTLSIWITVCVLN 335


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 407 TDIFGIAQTSKYD 369
           TD+F + +T KYD
Sbjct: 418 TDVFHVQETDKYD 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,275
Number of Sequences: 438
Number of extensions: 3465
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)