Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_D15
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 29 1.0
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 26 5.4
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 26 5.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 7.1
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 9.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.4
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.4
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 28.7 bits (61), Expect = 1.0
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -2
Query: 560 YESEDSQLETRLLNSSADRDHVLMKSQXXXXXXXXXXXNIQNITQLTKELREAE-SNGPL 384
YE + S L L + A+ D + K ++ +++ +++ E +NG
Sbjct: 378 YEEKISSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEELSKYVASIQDKERNNGQN 437
Query: 383 RLQNQKWIQNLMRVQELSGVKLLQEEEIER 294
L+ Q IQ L R E KLL EE I R
Sbjct: 438 ALELQARIQQLERRNEDMYNKLLAEEIIRR 467
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 374 NQKWIQNLMRVQELSGVKLLQEEEIERLKKKEPELGLGEL 255
+Q W + + VKL Q+ IE KKK+ EL +L
Sbjct: 260 SQNWHVPCHMIYKFWNVKLCQKTSIETSKKKDSELSQSQL 299
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 311 EEEIERLKKKEPELGLGELTIDLASKEDEMSCIKIKIANRTEKPKEPE 168
EE++ ++K E DL SKED+ ++ K +R EK E E
Sbjct: 4009 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDK--DRQEKEDEEE 4054
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -2
Query: 428 QLTKELREAESNG-PLRLQNQKWIQNLMRVQELSGVKLLQEEEIERLKKKEPELGLGELT 252
+ +ELR + N L + Q R +E K +E EI + KKK+ L
Sbjct: 258 EAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEEREIVQKKKKQYRAWLASNL 317
Query: 251 IDLASKEDEMSCIKIK 204
S EDE + + I+
Sbjct: 318 PPEPSSEDEPARLSIR 333
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/56 (21%), Positives = 28/56 (50%)
Frame = -2
Query: 344 VQELSGVKLLQEEEIERLKKKEPELGLGELTIDLASKEDEMSCIKIKIANRTEKPK 177
V++ + + +E ++++KK + L ++T + K DE+ I + + PK
Sbjct: 93 VEDYTEAIKIPDEIVKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPK 148
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 386 LRLQNQKWIQNLMRVQELSGVKLLQEEEIERLKKKEPELG 267
LRLQ K Q +V + VKL+ +E +E+ +K E E G
Sbjct: 479 LRLQKLKDSQERKKVSAIRAVKLM-KEIVEKKQKLEMEKG 517
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 359 QNLMRVQELSGVKL--LQEEEIERLKKKEPE 273
++L R ++ SG + L++EE E + KKEPE
Sbjct: 44 ESLSRKRDSSGATVGDLKQEEKESMPKKEPE 74
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -2
Query: 419 KELREAESNGPLRLQNQKWIQNLMRVQELSGVKLLQEEEIERLKKKEPELGLGELTIDLA 240
+E R+ L+ + +K Q L R + K Q+E ++LKK++ E ++ +
Sbjct: 635 EEARKKREEQRLKREQEKKQQELERQKREEKQK--QKEREKKLKKQQQEADREKMAREQR 692
Query: 239 SKEDEMSCIKIKIANRTEKPKEPE 168
+E+E I + R + KE E
Sbjct: 693 LREEEEKRILEERKRREKLDKEEE 716
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 384 ERAITLCLSQLFCQLC 431
E+AI +C+ Q CQLC
Sbjct: 662 EKAIEICVDQHACQLC 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,877
Number of Sequences: 5004
Number of extensions: 45811
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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