Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D15
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   4.2  
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811...    29   5.6  
07_03_0379 - 17452525-17452695,17452990-17453325,17453419-174536...    28   7.4  

>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 181 PRNLKTECLCKNNSLSSVKNR*RKQLWILSLFI 83
           P+  KT+C     SL  VKN  RK  WI    +
Sbjct: 507 PKCQKTQCCANGMSLKYVKNYKRKAFWIYGCMV 539


>01_06_1577 -
           38379951-38380167,38380349-38380543,38380919-38381191,
           38381281-38381455,38381925-38382035,38382120-38382390,
           38382990-38383139,38383242-38384246
          Length = 798

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 453 EEEYPEYNTVDKRVERGRE*WPSPATKPEVDSEFDESSG 337
           EE++ E NTV+K VE   E  P P  K E    FD+++G
Sbjct: 101 EEKFSE-NTVEKPVESSEEKAP-PKEKEESKDTFDDANG 137


>07_03_0379 -
           17452525-17452695,17452990-17453325,17453419-17453691,
           17453784-17453858,17453951-17454105,17454198-17454314,
           17454394-17454684,17454811-17454859
          Length = 488

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = -2

Query: 356 NLMRVQELSGVKLLQEEEIERLKKKEPELGLGE 258
           ++ ++Q++   K L++EE+E +K+K  +L LGE
Sbjct: 97  SMKKLQQVVNEKSLEDEEMELMKEKYTKLLLGE 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,128
Number of Sequences: 37544
Number of extensions: 258371
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)