Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D15
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    31   0.94 
AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 441 PEYNTVDKRVERGRE*WPSPATKPEV----DSEFDESSGAVWCET 319
           PE   V  RVE+  E   + A + EV    +SE++++ G VWC T
Sbjct: 209 PELTDVLARVEKANEYRKAQAVEIEVFPPCNSEYNQNGGRVWCST 253


>AC024765-5|AAF60527.3|  975|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.3 protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 335 LSGVKLLQEEEIERLKKKEPELGLGELTIDLASKEDEMSCIKIK 204
           +S   ++ +  IER    EP +      +DL SKE ++S +K +
Sbjct: 497 ISEYMMISQVLIERFGNYEPAIEYASKAVDLCSKEGQLSFLKAR 540


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 362 IQNLMRVQELSGVKLLQEEEIERLKKKEPELGLGELTIDL 243
           I+NL   +E   +K ++E+E E ++ KE   G+ E  I+L
Sbjct: 126 IENLKPTREAPQLKTVEEDENEDVEFKEDSTGIEEKDIEL 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,078
Number of Sequences: 27780
Number of extensions: 254295
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)