Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_D13
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 71 1e-13
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 34 0.016
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 33 0.036
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.11
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 29 0.45
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 1.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.8
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 2.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.4
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 27 3.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 3.1
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 4.2
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 7.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.3
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.3
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 25 7.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.3
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 9.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.6
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 71.3 bits (167), Expect = 1e-13
Identities = 38/94 (40%), Positives = 58/94 (61%)
Frame = -3
Query: 391 VQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSK 212
+Q ++ V ++L++QL EN V EL+ + DS +YK IGP LVKQ EEA+ NV
Sbjct: 11 LQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNVKT 70
Query: 211 RMEYISKEIKRTDDHICALENKQEALQENLNKLR 110
R+++I+KEI R LEN+ + QE +K++
Sbjct: 71 RLDFINKEIAR-------LENQTKISQEEFSKVK 97
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 34.3 bits (75), Expect = 0.016
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = -3
Query: 361 QKQQLDSQLN-ENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEI 185
QK + S +N + +A KEE K+ E + I DL E +Q + +E + E
Sbjct: 119 QKASVSSMVNRKQRAAKEEQKI---QEEFERQI------TDLLEEQQQLKLEIERLEAET 169
Query: 184 KRTDDHICALENKQEALQENLNKLRND 104
+R + E ++EAL+E +LRN+
Sbjct: 170 ERANSETEQYEKQKEALEEEYEELRNE 196
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 33.1 bits (72), Expect = 0.036
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Frame = -3
Query: 349 LDSQLNENKAVKEELKLLRKDSEVYK-LIGPVLVKQDLEEARQNVSKR------MEY--I 197
+DS+ ++ K + E++K L ++ L+ + +++D E + + R E+ I
Sbjct: 70 IDSK-DKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDI 128
Query: 196 SKEIKRTDDHICALENKQEALQENLNKLRNDLGET 92
K ++++D+ +C L+ + E LQ+ L + N+L E+
Sbjct: 129 KKRLEKSDETVCKLKEENENLQDMLRNVGNELVES 163
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.5 bits (68), Expect = 0.11
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Frame = -3
Query: 391 VQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIG-PVLVKQDLEEARQNVS 215
++ D+ K+QL+SQL KA +K L +E YK +L+ + + + +
Sbjct: 1263 LKTDLANFRLNKEQLESQLQTEKAA---VKKLENSNEEYKRHNQEILLSLNSSTSTSSDA 1319
Query: 214 KRM--EYISKE--IKRTDDHICALENKQEALQENLNKLRNDLGETXTK 83
R+ E +SKE I+ + I L+++ E ++ L N+ + +K
Sbjct: 1320 SRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSK 1367
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.5 bits (63), Expect = 0.45
Identities = 20/97 (20%), Positives = 49/97 (50%)
Frame = -3
Query: 385 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 206
KD K + ++ +++++ E KAV+ E+K+ E + + K E+ +Q+ +
Sbjct: 61 KDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPK---EKEKQDT---I 114
Query: 205 EYISKEIKRTDDHICALENKQEALQENLNKLRNDLGE 95
++IS ++ + +E + E+L+ + + DL +
Sbjct: 115 QWISNAVEELERQAELIEAEAESLKATFKRGKKDLSK 151
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = -3
Query: 385 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 206
++I+ +++ + +N+ +E + ++KD EV ++ ++ L +AR+N + M
Sbjct: 508 REIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALM 567
Query: 205 EYI 197
E++
Sbjct: 568 EHM 570
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 325 KAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTD-DHICALEN 149
KA + +K D++ L GP++ +QD++ + + K + + + D I LE
Sbjct: 603 KAAVDRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEE 662
Query: 148 KQEALQENL 122
+ L++ L
Sbjct: 663 AKTVLRDTL 671
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -3
Query: 388 QKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQD--LEEARQNVS 215
+++ + + + +SQL E + ++L+L + ++ K L ++ LEE +
Sbjct: 40 EQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETND 99
Query: 214 KRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGETXTK 83
K + ++++++TD E + ++L+ + + L E K
Sbjct: 100 KLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDK 143
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -3
Query: 232 ARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGETXTKSLXNV*IKSK 53
A Q++ +EY + + HIC + +EA+ + +K+ N + + + +V +K
Sbjct: 92 ALQDIISVLEYRRNKNPTSTAHICIDKKGKEAVSYSWDKILNRAKQFASVAQNHVGLKPG 151
Query: 52 TFLFFYY 32
T + YY
Sbjct: 152 TRVILYY 158
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 373 KAVTQKQQLDSQLNENKAVKEELKLLRKDSE 281
KA + QQL SQL EN V ++ LRK E
Sbjct: 61 KASSGMQQLKSQLEENIPVNSAMENLRKVEE 91
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -3
Query: 232 ARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGETXTKSLXNV*IKSK 53
AR+ R E + KE K E +AL+ K+ DL + T + + K
Sbjct: 508 ARKQYELRREALIKETKTA-------EAASKALKSTQRKIEQDLKRSTTADTQRILLGRK 560
Query: 52 TFLFFYYDSLVCLENY 5
TF F + + E Y
Sbjct: 561 TFFFEKFHWFISSEGY 576
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.4
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = -3
Query: 364 TQKQ-QLDSQLNENKAVKEELKLLRK-----DSEVYKLIGPVLVKQ-DLEEARQNVSKRM 206
TQ Q +LDS + N +K+E+ L++ ++E +L KQ ++E ++
Sbjct: 435 TQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQ 494
Query: 205 EYISKEIKRTDDHICALENKQEALQENLNKL 113
E ++ ++ + L+NK+E L E L KL
Sbjct: 495 EQNNEFDRQLKEQEEDLQNKEEELTE-LRKL 524
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 558 ELTHITSTKIFEQVKKKRKRFLY*TVYFLSNHT 460
+L +++ T++FEQ+ KK + YFLS T
Sbjct: 435 QLQNLSITEVFEQMSKKYGYYTTQNSYFLSRDT 467
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -3
Query: 274 KLIGPVLVKQDLEEARQNVSKRM 206
+ +GP L+ D+E+ R+N S+++
Sbjct: 281 RYLGPALLNPDMEDDRENTSRKL 303
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 238 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 107
E RQN + + + E++R + +E +++ +ENLNK RN
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRE-TQQIEIRKQKREENLNKRRN 52
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 582 VLNTYWPSFYTRAAFRAEVTLPYRP 656
V NTYW S+ + A+ +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = -3
Query: 385 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 206
K I++ Q ++ ++N NK EEL +++ +L L+ Q ++E ++ +KR+
Sbjct: 358 KLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRL 417
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.3
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = -3
Query: 361 QKQQLD---SQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEA--RQNVSKRMEYI 197
QKQ L+ S N ++ V+E + L +L+K E A R N+ K+ E
Sbjct: 48 QKQNLNLPNSYTNSSQKVRESTVNSQASLSSNDLRTELLIKSG-ENAILRANLLKQSEAN 106
Query: 196 SKEIKRTDDHICALENKQEALQENLNKLRNDLGETXTKSL 77
+ ++ ++ I + KQ+ Q L +L+ ++ TKSL
Sbjct: 107 NAALESLNNSI---KQKQDEYQRKLEELKKEIEYAKTKSL 143
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 238 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDL-GETXTKSLXNV 68
EEAR V + +I I AL+ E LQE KL N GE SL ++
Sbjct: 453 EEARSKVPDEFQTQYPDIANPPTLILALKGYIERLQEQQGKLNNRFSGEGEDYSLDDL 510
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 190 EIKRTDDHICALENKQEALQENLNKLRND 104
E ++ D I AL + ++LQE L ++ND
Sbjct: 330 ETEKLQDQIKALLERNQSLQEALETVKND 358
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 441 AIVFQSRYDLIENKQFNTEIFSVFFSP 521
+IVF + + N +FNT IFS +P
Sbjct: 396 SIVFNATVNFTRNGKFNTSIFSSNLNP 422
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 243 IWKKPDKTSPNVWSTLAKKSKEQMITYV 160
IWK+ T+P+V K+K+ TYV
Sbjct: 37 IWKRAMSTAPHVEYDAGSKTKKVATTYV 64
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 573 IGNLNE---LTHITSTKIFEQVKKKRKRFLY*TVY 478
IG L+E LTH+T +I E + KK F TV+
Sbjct: 483 IGALSEVYGLTHLTELEILEHLNKKEHVFNILTVF 517
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 455 LKHNGGRNTKKVSKTTRIISRCSKRHKESGHSE 357
L HN N + + + ++SR +R + HSE
Sbjct: 120 LWHNDYSNVRGMESMSSLVSRLPQRQSSASHSE 152
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 9.6
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Frame = -3
Query: 391 VQKDIKKAVTQKQQLDSQLNE-----------NKAVKEELKLLRKDSEVYKLIGPVLVKQ 245
++K+++K + +K Q + +L E N +K+EL LRK S+ + V
Sbjct: 1079 IEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFV-D 1137
Query: 244 DLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGE 95
DL+E S +E ++ E + + EAL E + L N L +
Sbjct: 1138 DLKEK----SDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSD 1183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,354
Number of Sequences: 5004
Number of extensions: 37828
Number of successful extensions: 180
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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