Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D13
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.84 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   3.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 231 PDKTSPNVWSTLAKKSKEQMIT 166
           P+KT P++ STL K SK+ + +
Sbjct: 671 PNKTLPSLPSTLTKNSKQGLFS 692


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 223  NVSKRMEYISKEIKRTDDHIC 161
            NV+K       ++K TDD IC
Sbjct: 1682 NVNKHCTIHRTQVKETDDKIC 1702


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 123 KFSCSASCLFSKAH 164
           KF C  +C+F K H
Sbjct: 51  KFGCFEACVFQKLH 64


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 543 LCVSIHLNSL**VVLNTYWPS 605
           +C S++L++L  + + TY+PS
Sbjct: 28  MCTSLNLSNLFWLFVGTYFPS 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 656 RPVRKCYFC 630
           +P+ KCYFC
Sbjct: 422 KPLDKCYFC 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,410
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)