Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D12
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    31   0.10 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.8  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  

>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = -3

Query: 441 FKCWNLFKFYNLNLKAVSETYRNVIFFMAFV 349
           FK  +LF F N+NL  ++ET+ N+ F+++++
Sbjct: 7   FKATDLFSFNNINLDPLTETF-NISFYLSYL 36


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 408 LNLKAVSETYRNVIFFMAFVFLE 340
           LN+K+VSE+++N   ++  VF E
Sbjct: 485 LNIKSVSESFKNFWVYLQNVFRE 507


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 147 LSNNYFXRLFDIIFRVLELLMFV 79
           L+NN   R+F IIF  L LL+ V
Sbjct: 38  LTNNRDNRMFSIIFSFLYLLLIV 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,119
Number of Sequences: 5004
Number of extensions: 22013
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)