Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D12
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0914 + 20788103-20789642,20790036-20790529                       27   6.8  
04_03_0913 + 20777859-20780309                                         27   9.0  

>04_03_0914 + 20788103-20789642,20790036-20790529
          Length = 677

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  LHTCSCLKANVINAMKSXFHNDITNIKSS 97
           L+ CSC   +  N   S +HN++ NI+ S
Sbjct: 387 LNNCSCTAYSFSNGGCSIWHNELLNIRKS 415


>04_03_0913 + 20777859-20780309
          Length = 816

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 11  LHTCSCLKANVINAMKSXFHNDITNIK 91
           L  CSC   + IN   S +HN++ NI+
Sbjct: 386 LTNCSCTAYSFINGGCSIWHNELLNIR 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,915,732
Number of Sequences: 37544
Number of extensions: 97249
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)