Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D12
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   7.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 65  FHNDITNIKSSXTLKIMSNKRKK*LLDKY 151
           F ND++  +S+ T+ ++S+  ++ L  KY
Sbjct: 347 FCNDLSIDRSTNTMYVLSDNFQQLLFSKY 375


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 372  VIFFMAFVFLEVFYXWCFS 316
            VI  +AFVF E    W +S
Sbjct: 1010 VIIVLAFVFRESVGAWAYS 1028


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 309 NKTKNTXNKRLQGKQKP*KRLHSDKF 386
           +K   T ++ +QGK+K    L+S+ F
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,101
Number of Sequences: 438
Number of extensions: 1747
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)