Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D10
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    33   0.015
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    33   0.015
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   2.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    24   9.0  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    24   9.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.015
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = -2

Query: 421 QVVKVANVSLLALYKEKKERPRS 353
           +VVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.015
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = -2

Query: 421 QVVKVANVSLLALYKEKKERPRS 353
           +VVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 117 YRNKLNSKEQTINEYL 70
           YRNKL  KE+T NE +
Sbjct: 571 YRNKLKDKEETYNEVM 586


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 105  LNSKEQTINEYLFVSVTCCREAR 37
            LN+KE  I +Y  +++ CC  A+
Sbjct: 981  LNNKEALIQKYELLAILCCDLAK 1003


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 160 TSWHSVVANIKMITSFTAQIESR 228
           T W  VVA+   +T FT+++E++
Sbjct: 66  TLWIGVVADCSYVTHFTSRMEAK 88


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 15  HFMNFINNALPDSRSLKQI 71
           H++NF+ +  P S+SL QI
Sbjct: 62  HYVNFLRSVTPYSQSLPQI 80


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 TIFTLSQCTPMILVAPFSLCRERGETRWLL 411
           T+  L+QC  +I +  F++ RE     WLL
Sbjct: 179 TVVFLAQCVKVISIGLFNIRREMMIIIWLL 208


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 261 TFKLNLTKIEEKQR*KSQNQYNIYLITMYTYDLGR--SFFSL 380
           +F  +L K++E      + +YN+YL+  Y Y + R  SF+ L
Sbjct: 342 SFGDDLQKLKETY---GEEEYNLYLVDPYRYRVKRKESFYDL 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,349
Number of Sequences: 5004
Number of extensions: 26963
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)