Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D10
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...    40   9e-04
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...    40   9e-04
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    29   2.2  
04_04_0707 - 27435894-27436474,27437707-27438241                       28   3.8  

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = -2

Query: 421 QVVKVANVSLLALYKEKKERPRS 353
           +VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = -2

Query: 421 QVVKVANVSLLALYKEKKERPRS 353
           +VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 290 KVVKVSGVSLLALFKEKKEKPRS 312



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = -2

Query: 421 QVVKVANVSLLALYKEKKERP 359
           +VVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>07_01_0783 +
           6068229-6068503,6069159-6069269,6069806-6070150,
           6071030-6071211,6071331-6071422,6071505-6071835,
           6071960-6072170,6072551-6072665,6073677-6073838,
           6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 ENLRINTIFTLSQCTPMILVAPFSLC 381
           +NL ++ IF  S C P + V  F+LC
Sbjct: 136 DNLGLSKIFGFSTCEPGVFVVEFTLC 161


>04_04_0707 - 27435894-27436474,27437707-27438241
          Length = 371

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 159 QNITDAFKLRS*LTYRNKLNSKEQTINEYLFVSVTCCREARCL 31
           + I+DAF   S L  ++K + KEQ +N +  ++  CC  +  L
Sbjct: 315 RKISDAFS--SELVKQSKNSGKEQNLNAFFELATACCNPSPSL 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,930,367
Number of Sequences: 37544
Number of extensions: 131679
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)