Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D10
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.16 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   0.85 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   4.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 316 INTIFTLSQCTPMILV 363
           + TIFT S C PMIL+
Sbjct: 212 VATIFTFSYCIPMILI 227


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 322 TIFTLSQCTPMILVAPFSLCRERGETRWL 408
           T    + C   ++V PFS   E  E RWL
Sbjct: 85  TSLAFADCLVGLVVMPFSAIYEVLENRWL 113


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 47  RQQVTETNKYSLIVCSFEFNLFRYVSQERSLK 142
           ++Q T   +Y  +    EF+  RY+++ R ++
Sbjct: 9   KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIE 40


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 289 KKNNVENLR 315
           KKNNVENL+
Sbjct: 11  KKNNVENLK 19


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 QFISIC*SRA*FESISNVLTSWHSVVAN 186
           QF+ +C SR   +S    L S ++V+ N
Sbjct: 341 QFLQVCRSRRHSDSCCLCLDSMNAVIRN 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,044
Number of Sequences: 438
Number of extensions: 1851
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)