Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_D02
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.3
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 27 1.7
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 2.2
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 3.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 3.8
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 5.1
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 6.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 25 8.8
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 8.8
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 491 AIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 357
++P + PN+ P+ P A F + L+ F+ GG++Y
Sbjct: 2299 SLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVGGLLY 2343
>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 246 SCVELPLLTRRAWLHNTRPHTQPDHTKTESNSPYLCGV 133
SC + P+ RR WL + +P QP+ + N+ ++ G+
Sbjct: 172 SCFQDPIRVRRDWLDSIKP-GQPETLWFDQNTQHVIGL 208
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 500 GLFAIPFTVLEIPNIK--IKKPTWLQAPSAMTTFSLVLLSYFLVT 372
G+ A+ F PN + ++K + +PS +T+F L L SY T
Sbjct: 24 GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 170 PKLNRILLISVAFLCILVSFFTTWI 96
P + +L + ++ L ++V FFT W+
Sbjct: 81 PNIYSLLRLLISVLAVIVVFFTAWV 105
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 5 NLLVYSPKIKQYKISLQINSVNILATS 85
N++ SPKIK+ + + +N ++LATS
Sbjct: 14 NIIKDSPKIKEQENTSTVNESDVLATS 40
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 143 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 48
S+ F IL+ T + KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 231 PLLTRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 112
P T + +NT P + QP+ TK +NSP P+Y +V+
Sbjct: 145 PGSTNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 445 FLIFMFGISKTVNGIANSPSISLLLVQILTCYFNKNKTCSIHLN 576
FL+ + G+ + + + SI ++ ILT Y K K C I N
Sbjct: 166 FLLELRGLREVTFALFITFSIVPIITGILTVYIYKKKYCVIKFN 209
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 314 HRSLNPRSVARLSHRK*YLQ*P-KSKRVTPVKRLSWQTELEAMLV---S*FLCLEFPK 475
++ + PR +A L R+ ++ K TP +RL W + +A+ + S + CL + K
Sbjct: 887 NQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTK 944
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 359 YDVIVEPPSVGSTTDEHGHSRPVAFMPNRVNG 264
Y V+V P+ S E +PV F+ NR+NG
Sbjct: 144 YGVVVHYPNSESLI-ERFVEKPVEFVSNRING 174
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 153 SPYLCGVPMYFSVILYHLDI 94
+P CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,433
Number of Sequences: 5004
Number of extensions: 61847
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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