Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D02
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        121   4e-28
03_04_0162 + 17858802-17861168                                         30   1.7  
11_01_0359 - 2731522-2732346                                           29   3.0  
01_07_0235 + 42198662-42199615,42200129-42200746                       28   5.2  
02_02_0034 - 6246183-6246553,6246672-6249699                           28   6.9  
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    27   9.1  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    27   9.1  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  121 bits (292), Expect = 4e-28
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
 Frame = -2

Query: 497 LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 318
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 317 D-EHGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXFIILDRTHNPTTPKLNRILLIS 141
           D   G  RPV F+P RVNGQYI+EGL+            I+LD   +   P+  R+    
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGG 151

Query: 140 VAFLCILVSFFTTWIFMRMKLPGYL 66
                I++++    +F+R+K+PGYL
Sbjct: 152 SGVAAIVIAYAMAMLFLRIKIPGYL 176


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 359 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 279
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 185 HNPTTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 69
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 76  GNFIRINIQVVKNDTKIHRNATEIRRIRFSFGVV 177
           G  + +NI  +  D KI +NA E R  RF   +V
Sbjct: 412 GAMVLVNISAIGRDEKIWKNANEFRPERFKDDMV 445


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 586 TIGNLNELNKFYFC*SNK*GFVPKAV-KWK 500
           +IGNL++LN+FY   +N  G +P  + +W+
Sbjct: 557 SIGNLSQLNEFYLDRNNLNGSIPANIGQWR 586


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 442 GFLIFMFGISKTVNGIANSPSISLLLVQ 525
           GFL    G+ + +  +AN PS+ L  VQ
Sbjct: 23  GFLCVKDGVDEMIKYVANEPSVGLYFVQ 50


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 174 HTKTESNSPYLCGVPMYFSVILYHLDIYAYEVARIFTELICKLILYCFIFG--LYTNK 7
           H+   S  PYL G P Y  V +  L +    V  +   L+  +++  F+ G  +Y N+
Sbjct: 513 HSIGHSEQPYLYGFPYYRVVPIVSLAVLIGLVYAVVAPLLLPILVIYFLLGYAVYINQ 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,098
Number of Sequences: 37544
Number of extensions: 381540
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)