Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C24
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit g...   136   4e-31
UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2; ...    87   3e-16
UniRef50_Q29330 Cluster: Translocon associated protein gamma cha...    79   5e-14
UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma j...    74   2e-12
UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1; ...    46   5e-04
UniRef50_Q1LXZ9 Cluster: Novel protein; n=9; Clupeocephala|Rep: ...    32   8.1  
UniRef50_Q1Q1Y4 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  
UniRef50_Q22C53 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  

>UniRef50_Q9UNL2 Cluster: Translocon-associated protein subunit
           gamma; n=36; Eumetazoa|Rep: Translocon-associated
           protein subunit gamma - Homo sapiens (Human)
          Length = 185

 Score =  136 bits (328), Expect = 4e-31
 Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
 Frame = -1

Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
           + ++T  ST+L+A AY+N KF LKH            E++RKL  AD++ MSRKEKDERI
Sbjct: 62  YSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 121

Query: 389 LWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
           LWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168


>UniRef50_Q95XS1 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 178

 Score = 87.0 bits (206), Expect = 3e-16
 Identities = 43/103 (41%), Positives = 65/103 (63%)
 Frame = -1

Query: 557 LVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKLADDKXMSRKEKDERILWKK 378
           L    + +LL+LA +N K  LKH            E+S + A DK M+ KEK+ER L++K
Sbjct: 59  LSAVGTAYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRK 118

Query: 377 NEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
           NEVAD E+T  S+FY N+L+LTI+++S+F++L    P  N ++
Sbjct: 119 NEVADTESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLI 161


>UniRef50_Q29330 Cluster: Translocon associated protein gamma chain;
           n=2; Laurasiatheria|Rep: Translocon associated protein
           gamma chain - Sus scrofa (Pig)
          Length = 77

 Score = 79.4 bits (187), Expect = 5e-14
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
 Frame = -1

Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
           + ++T  ST+L+A AY+N KF LKH            E++RKL  AD++ MSRKEKDERI
Sbjct: 7   YSVMTLVSTYLVAXAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 66

Query: 389 LWKKNEVADYE 357
           LWKKNEVADYE
Sbjct: 67  LWKKNEVADYE 77


>UniRef50_Q5D974 Cluster: SJCHGC01752 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC01752 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 173

 Score = 74.1 bits (174), Expect = 2e-12
 Identities = 34/90 (37%), Positives = 58/90 (64%)
 Frame = -1

Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKLADDKXMSRKEKDERILW 384
           F +++ AST+L++LAY+N+K  L              E++ +   DK +S+K +++ +  
Sbjct: 58  FAIISLASTFLMSLAYKNSKAPLMERIAIRRTEAITKEVNSEACKDKKLSKKNREDIVRE 117

Query: 383 KKNEVADYEATTYSIFYNNALFLTIVILSS 294
           +  +VADYE+TT+SIFYNN LFL +++L S
Sbjct: 118 RTKKVADYESTTFSIFYNNCLFLLLLLLLS 147


>UniRef50_Q55GT5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 170

 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 30/102 (29%), Positives = 45/102 (44%)
 Frame = -1

Query: 554 VTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKLADDKXMSRKEKDERILWKKN 375
           VT  +  +L  AY N  +++K                 K+ D K  +  +K+ + L    
Sbjct: 57  VTLFAAIVLTFAYNNI-YRMKRLKLSASREHISIASKNKVGDKKKFAAAQKEVQAL---- 111

Query: 374 EVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
            V  +EA   SI YNNA+FL  V + SF I +      NYI+
Sbjct: 112 -VTSHEAIAASIMYNNAVFLICVSIFSFIIFKNVPLVYNYII 152


>UniRef50_Q1LXZ9 Cluster: Novel protein; n=9; Clupeocephala|Rep:
           Novel protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 751

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 136 CLKCLILKLFVSRGALNFHXHXXPXESRARSPDAA 240
           C+KC    ++ S     FH H  P ES+   PDAA
Sbjct: 166 CIKCSFCNMYFSPNKFIFHSHRTP-ESKYTQPDAA 199


>UniRef50_Q1Q1Y4 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 1084

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 437 LADDKXMSRKEKDERILWKKNEV-ADYEATTYSIFYNNALFL 315
           LA  K     EKDE   WK ++  ADY   T+  FY+NAL L
Sbjct: 594 LAQYKTPFAIEKDETSSWKSSDKGADYIIITHEDFYDNALAL 635


>UniRef50_Q22C53 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1512

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 165 CITWRIKLPSSXGSXGE*SKKSRCSRERHNVINCRCECTQN--VETAQDDNSQEKCVIVE 338
           C+  ++ LP S  + G   K S+C +E  N +    +C Q+  +++  DD   + C +++
Sbjct: 554 CLLNQVCLPLSIQNPGREDKTSKCLQEGENGVFGAIQCFQSFCLKSTSDDTQDQYCALID 613


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,949,218
Number of Sequences: 1657284
Number of extensions: 8302471
Number of successful extensions: 18362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18360
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)