Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C24
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           28   4.5  
04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537...    28   4.5  
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           27   7.9  

>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 416 SFXYHQQASWTFHG--QQHPPCAQQHGAST 499
           S   HQ  SW F+   QQ+PP A QH  +T
Sbjct: 258 SLELHQLHSWYFNSSFQQNPPPAVQHSPTT 287


>04_04_0547 -
           26152892-26153194,26153248-26153329,26153349-26153707,
           26154366-26154404,26154998-26155168,26155651-26155725,
           26156858-26157055,26157208-26157402
          Length = 473

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -2

Query: 382 KRMRWQIMKLPHTQFSTITHFS*LLSS*AVSTFCVHSHLQLITLCLSRLHLDFLL-YSPQ 206
           K++ W +  +P T    +T++S L+++  +ST+     L  ITL +     +FL+   P 
Sbjct: 78  KKLAWALFNVPRTSLELLTYYSRLVAT--LSTYM--KDLPSITLSMLEDEFNFLINKKPS 133

Query: 205 XPXXDGSLMRHVIQTVLILNILDILWQLKI 116
                 + + H  +   +  + ++L ++++
Sbjct: 134 SSDCSTAGLSHYHEDFAVAVVDEVLEEIRV 163


>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -2

Query: 415 AEKKRTKESCG---KRMRWQIMKLPH 347
           A   RT +  G   KRMRWQ+ + PH
Sbjct: 155 ANPHRTDDDAGPSRKRMRWQVKRTPH 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,643
Number of Sequences: 37544
Number of extensions: 224394
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)