Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_C24
(566 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 136 7e-32
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 136 7e-32
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 136 7e-32
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 136 7e-32
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 32 1.6
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.6
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.6
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.6
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.6
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 32 1.6
AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet re... 31 2.8
U14755-1|AAA21644.1| 404|Homo sapiens LIM domain transcription ... 29 8.6
BC111936-1|AAI11937.1| 406|Homo sapiens LIM homeobox 1 protein. 29 8.6
BC101674-1|AAI01675.1| 406|Homo sapiens LIM homeobox 1 protein. 29 8.6
BC020470-1|AAH20470.1| 260|Homo sapiens LHX1 protein protein. 29 8.6
AY669508-1|AAV74189.1| 296|Homo sapiens functional smad suppres... 29 8.6
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 136 bits (328), Expect = 7e-32
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Frame = -1
Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
+ ++T ST+L+A AY+N KF LKH E++RKL AD++ MSRKEKDERI
Sbjct: 62 YSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 121
Query: 389 LWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
LWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 136 bits (328), Expect = 7e-32
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Frame = -1
Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
+ ++T ST+L+A AY+N KF LKH E++RKL AD++ MSRKEKDERI
Sbjct: 62 YSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 121
Query: 389 LWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
LWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 136 bits (328), Expect = 7e-32
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Frame = -1
Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
+ ++T ST+L+A AY+N KF LKH E++RKL AD++ MSRKEKDERI
Sbjct: 62 YSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 121
Query: 389 LWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
LWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 136 bits (328), Expect = 7e-32
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Frame = -1
Query: 563 FILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXEMSRKL--ADDKXMSRKEKDERI 390
+ ++T ST+L+A AY+N KF LKH E++RKL AD++ MSRKEKDERI
Sbjct: 62 YSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERI 121
Query: 389 LWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 249
LWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.9 bits (69), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 395 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 255
R++W + T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet
receptor for type I collagen protein.
Length = 532
Score = 31.1 bits (67), Expect = 2.8
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 222 KKSRCSRERHNVINCRCECTQNVETAQD--DNSQEKCVIVEN*VCGSFIICHLILFPQDS 395
K C H+ NCR CT E + D DNS +C ++ N V CH+ + +
Sbjct: 341 KVGGCRSSLHHSNNCRHCCTI-CEWSCDGLDNSTNECFVLHNWVFLKISQCHVDHIQEST 399
Query: 396 FVL 404
FVL
Sbjct: 400 FVL 402
>U14755-1|AAA21644.1| 404|Homo sapiens LIM domain transcription
factor LIM-1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 154 ILNILDILWQLKI*MSCECMC 92
+LN+LD W +K CEC C
Sbjct: 16 LLNVLDRAWHVKCVQCCECKC 36
>BC111936-1|AAI11937.1| 406|Homo sapiens LIM homeobox 1 protein.
Length = 406
Score = 29.5 bits (63), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 154 ILNILDILWQLKI*MSCECMC 92
+LN+LD W +K CEC C
Sbjct: 16 LLNVLDRAWHVKCVQCCECKC 36
>BC101674-1|AAI01675.1| 406|Homo sapiens LIM homeobox 1 protein.
Length = 406
Score = 29.5 bits (63), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 154 ILNILDILWQLKI*MSCECMC 92
+LN+LD W +K CEC C
Sbjct: 16 LLNVLDRAWHVKCVQCCECKC 36
>BC020470-1|AAH20470.1| 260|Homo sapiens LHX1 protein protein.
Length = 260
Score = 29.5 bits (63), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 154 ILNILDILWQLKI*MSCECMC 92
+LN+LD W +K CEC C
Sbjct: 16 LLNVLDRAWHVKCVQCCECKC 36
>AY669508-1|AAV74189.1| 296|Homo sapiens functional smad
suppressing element 18 protein.
Length = 296
Score = 29.5 bits (63), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 136 CLKCLILKLFVSRGALNFHXHXXPXESRARSPDAA 240
C+KC ++ S FH H P +++ PDAA
Sbjct: 171 CIKCSYCNMYFSPNKFIFHSHRTP-DAKYTQPDAA 204
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,113,940
Number of Sequences: 237096
Number of extensions: 1385378
Number of successful extensions: 5996
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5992
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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