Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C18
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   4.3  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   4.3  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.6  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.6  

>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 559 SSANVGAVAESSGIGGGQVTYTKEVTVSRNPTLFQDIFNIPISALKAVSSFLS 401
           SSANV  V  S     G    T    +S+N  +  +  N  +    A SS +S
Sbjct: 214 SSANVDGVQNSVQANEGSTVQTDSSAISKNDNVQVETSNEEVGGFGAASSKIS 266


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 571 VGAQSSANVGAVAESSGIGGGQVTYTKEVTVSRNPTLFQDIFNIPISALKAVSSFLS 401
           +G Q+S  + +     G GGG  +  + +TV R   L +    +    L A S  LS
Sbjct: 233 IGVQASGAI-SYTRVVGTGGGYASTGRAITVERYIELLETASTVGTKLLNASSDILS 288


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 386 VGCCVTKEAANSFQCRNWNVKNILEQSWIS*HCNFFSVGYLTASNATTFS 535
           +G C+   AAN F   +    N+   + IS    FF++G  T  N   F+
Sbjct: 107 LGFCIIWFAANYFSNSSLGFTNVASFTIISSMSGFFTLGLGTIVNVERFT 156


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 381 TFPFRNQRQSKQNLTSYHR 325
           TFP+   R SK+ + SYHR
Sbjct: 399 TFPYYKTRLSKRAVRSYHR 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,625
Number of Sequences: 5004
Number of extensions: 46539
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)