Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C18
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    30   1.9  
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656...    29   4.5  
11_04_0293 + 15926561-15928834                                         28   7.8  

>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 571 VGAQSSANVGAVAESSGIGGGQVTYTKEVTVSRNPTLFQDIFNIPI 434
           +G   SAN G +  S G G  +++  ++  +S NPTL ++I N+P+
Sbjct: 838 LGGSGSANSGGLG-SFGSGLPELSQMQQ-QLSENPTLMREIMNMPL 881


>08_01_0727 +
           6567935-6568112,6568197-6568912,6569061-6569162,
           6569236-6569547,6569862-6570299
          Length = 581

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -3

Query: 262 ASQVIGDIFAIPINTL------SAVNQLLENNVPVRKRVQVSQDESAEPTRVRLGPHARR 101
           A ++IGD+     + L        VN++ +  +P R       D+ A P+R R+    ++
Sbjct: 70  ARKMIGDVSVTEFSQLLTRQAAGRVNRVYDGELPPRANTH-KVDDDAGPSRKRMRGQVKK 128

Query: 100 RANKRVVVIQESDDKE 53
              KR     ++DD+E
Sbjct: 129 APRKRRAPDSDADDEE 144


>11_04_0293 + 15926561-15928834
          Length = 757

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 574 DVGAQSSANVGAVAESSGIGGGQVTYTKEVTVSRNPTLFQDIFNIPISALKAVSS 410
           D GA   A   A   ++ +    + YTK+V + ++PT  +  F  P  A+ A +S
Sbjct: 465 DSGAAGDAQSTAYVHAAALVSRSMLYTKDVLIGQSPT--EPAFANPPEAVAAAAS 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,509
Number of Sequences: 37544
Number of extensions: 285097
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)