Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_C17
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 227 1e-60
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 169 4e-43
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.23
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 2.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 2.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 2.9
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 3.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 3.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 3.8
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 6.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 8.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 25 8.8
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 8.8
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 227 bits (555), Expect = 1e-60
Identities = 101/191 (52%), Positives = 137/191 (71%)
Frame = -2
Query: 745 DEKKHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKND 566
+ K+ IR GDWS ++E++N LT+KP +YLVN+SE+D++R+KNK+LPK+K+WID+N
Sbjct: 198 ETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENS 257
Query: 565 PGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADE 386
PG LIP S E +L + E + K+ S L KIIV GY AL L +FT G DE
Sbjct: 258 PGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGEDE 317
Query: 385 VKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQGRNY 206
V++WTI+KGTKAPQAAG IHTDFEK F++ E+MH++D + TE AC+AAGKY +G+ Y
Sbjct: 318 VRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEY 377
Query: 205 VVEDGDIIFFK 173
V+E GDI +K
Sbjct: 378 VMESGDIAHWK 388
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 169 bits (411), Expect = 4e-43
Identities = 80/194 (41%), Positives = 119/194 (61%)
Frame = -2
Query: 754 IXVDEKKHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWID 575
+ + + + I +W+ I +LN LT+KP +YLVN+ + DY+ + + L +KEW++
Sbjct: 211 VVLGKGRQISKAEWNDEQIPILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVE 270
Query: 574 KNDPGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAG 395
KN G +IP S + E +L + P E G S L +II GY AL L ++FTA
Sbjct: 271 KNSFGDQVIPLSVLFEEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTAS 330
Query: 394 ADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQG 215
V+AWTI G+KAP AAG IH+DF+K F+ EV+ F DF++ + ACK+ GK + +G
Sbjct: 331 EKIVQAWTIADGSKAPDAAGIIHSDFKKKFVAGEVIKFSDFEKYKSVDACKSVGKCKTKG 390
Query: 214 RNYVVEDGDIIFFK 173
++Y VE GDIIF+K
Sbjct: 391 KDYTVEPGDIIFWK 404
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 30.7 bits (66), Expect = 0.23
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = -2
Query: 673 LTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIPFSGVLESKLLDMDP 503
L S L NLS+ Y RK K KL EW+D D P+ F LES+L + P
Sbjct: 398 LASPSEASLPNLSK--YSRKNAK---KLNEWLDSLDFKLPIYLFHRKLESELSHLPP 449
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 366 RKAQRLLKPQDVSTPTSRRVSSWPKSCISR 277
RK Q+LL+P + ++R +S W K+ + R
Sbjct: 286 RKVQKLLEPDENIELSTRTLSQWRKNYVER 315
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2
Query: 727 RFGDW--SAADIEVLNKYLFLTSKPALYLVNLSE 632
R DW +AA++ NK+ +TSK ++L++LS+
Sbjct: 97 RISDWIFNAAELGEENKFCVVTSKNQVHLLSLSK 130
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 565 PGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQ 437
P PL+P G+ + ++ + ++ + G S LDK++V+
Sbjct: 1398 PRKPLLPSFGIAKGSYSNVRIPSMLRFIADSGKLSKLDKLLVE 1440
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 327 TPTSRRVSSWPKSCISRTSRKRVPKLRVKPPENTGNKVV 211
T TSR V + K C +R + +LRVK P K++
Sbjct: 23 TLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKIL 61
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 399 LEQMKSKPGQFRKAQRLLKPQDVSTPTSRRVSSWPKSCISRT 274
L+Q++ +P +LL Q++S PT + + K+ +SR+
Sbjct: 25 LKQLEKEPSFVLAVLQLLSSQEISLPTQQAAVIYLKNRVSRS 66
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 518 QFRFQHSREWNQRRAGVVFV 577
+F+ QH+ EWN R GV ++
Sbjct: 450 RFKIQHATEWNVRVVGVAWL 469
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 155 TGARVELEEDDVAILDDVITTLLPVFS 235
TG V + +D+V L D + T L VFS
Sbjct: 538 TGMVVRISKDEVTFLSDTLMTELTVFS 564
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 293 FGHDETLLEVGVDTSCGLRSLCAFLNCPGF--DFICSSCEEILQLQSLISLN 442
FG E +G TS ++ +NC + ++C C I+ + S IS+N
Sbjct: 1109 FGEMERDAVIGHGTSFLMQD--RLMNCSDYAQSWVCRDCGSIISIMSTISMN 1158
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 281 EMHDF-GHDETLLEVGVDTSCGLRSLC 358
E+ DF +TL+E+G+D+SC L + C
Sbjct: 245 EIIDFLEKSKTLVELGMDSSCSLVAEC 271
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 386 SQSLDNSERHKGSSSRRTYPHRLREGFHHGRSHA 285
S+S +ERH+ S+S R HH HA
Sbjct: 1283 SRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHA 1316
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 415 PIAEPYILEQ*SCPMHSLCRVPSSKRHVQSDPCPAI*IPTLQRMESEE 558
P+ +LE P+ SL PSS +++ S +PT+ E +E
Sbjct: 212 PVDAHKLLEPLPTPIPSLPSTPSSYQNLPSQSLTGESLPTVSNQEKDE 259
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 636 DKLTRYRAGFEVRNRYLFKTSISAALQSPN 725
D+ YR+ F V N +K S L PN
Sbjct: 51 DRYGNYRSDFNVNNLGFYKVSKDPTLDKPN 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,108
Number of Sequences: 5004
Number of extensions: 61439
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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