Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C17
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574...   245   3e-65
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721...   136   2e-32
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929...    32   0.57 
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891...    30   1.7  
11_06_0708 + 26475306-26478404                                         30   2.3  
11_06_0707 + 26467214-26470309                                         30   2.3  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     30   2.3  
11_06_0698 + 26385989-26389090                                         30   2.3  
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    30   2.3  
09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644...    29   4.0  
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406...    29   4.0  
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615...    28   7.0  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    28   7.0  
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879...    28   9.2  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    28   9.2  
08_02_0730 - 20472851-20473075,20473332-20474285                       28   9.2  

>08_01_0664 +
           5741111-5741113,5741491-5741658,5741741-5741864,
           5742078-5742169,5742254-5742352,5742476-5742589,
           5743190-5743254,5743342-5743467,5743870-5743945,
           5744502-5744594,5744944-5744994,5745084-5745182
          Length = 369

 Score =  245 bits (599), Expect = 3e-65
 Identities = 116/197 (58%), Positives = 144/197 (73%), Gaps = 3/197 (1%)
 Frame = -2

Query: 748 VDEKKHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKN 569
           +++ K +RFGDW +ADIE+LN +  LT+KP +YLVN+SEKDY RKKNK+LPK+  W+ ++
Sbjct: 167 LEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEH 226

Query: 568 DPGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITS---ALDKIIVQGYKALQLEYFFTA 398
             G  +IPFS   E  L DM P E   Y  E+ I      + KII  G+ A+ L YFFTA
Sbjct: 227 G-GETIIPFSCAFERLLADMPPDEAAKYCAENQIARQAIVIPKIIKTGFAAIHLIYFFTA 285

Query: 397 GADEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQ 218
           G DEVK W I++ TKAPQAAG IHTDFE+GFI AEVM F D KE G+E+A KAAGKYRQ+
Sbjct: 286 GPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAAGKYRQE 345

Query: 217 GRNYVVEDGDIIFFKFN 167
           G+ YVV+DGDIIFFKFN
Sbjct: 346 GKTYVVQDGDIIFFKFN 362


>03_06_0179 -
           32171712-32171780,32171861-32171920,32172096-32172166,
           32172246-32172273,32172356-32172502,32172626-32172904,
           32172949-32173011,32173137-32173247,32173605-32173658,
           32173761-32173949,32174275-32174670
          Length = 488

 Score =  136 bits (328), Expect = 2e-32
 Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 2/192 (1%)
 Frame = -2

Query: 736 KHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWID-KNDPG 560
           K  R  D +  + E +     LT KP +Y+ N++E D     N   P +KE      D  
Sbjct: 298 KPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNN--PHVKEVAKLATDLE 355

Query: 559 SPLIPFSGVLESKLLDMDPTERVSYLKEHGIT-SALDKIIVQGYKALQLEYFFTAGADEV 383
           S ++  S  +E++L ++   ERV YLK  G+T S L  ++   Y  L L  +FT G  E 
Sbjct: 356 SGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRTYFTTGDKET 415

Query: 382 KAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQGRNYV 203
           KAWTI  G  APQAAG IH+DF+KGFI AE + + DF   G+    +  G  R +G++Y+
Sbjct: 416 KAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYI 475

Query: 202 VEDGDIIFFKFN 167
           V++GD++ F+FN
Sbjct: 476 VQEGDVMLFRFN 487


>12_01_1113 -
           11888691-11888900,11891794-11892243,11892274-11892950,
           11893396-11893957,11894121-11894207
          Length = 661

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 30/110 (27%), Positives = 47/110 (42%)
 Frame = -2

Query: 739 KKHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPG 560
           + H R  +W AA        +FL      Y ++   + YI K+     +L +W ++ DP 
Sbjct: 243 RHHGRGSNWRAAHTNRRGWVMFLG-----YPLDFRNQHYINKEVSLFGRLVDWQER-DP- 295

Query: 559 SPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEY 410
              IP S +L +   D+D   RV  LKE  +   L +    G   L  E+
Sbjct: 296 ---IPGSVMLRAVFDDIDAVPRVFLLKELPLRGGLGQSWTFGVFVLNTEF 342


>04_03_0685 +
           18687520-18687787,18688637-18688725,18689102-18689195,
           18689237-18689304,18690300-18690383,18690458-18690745,
           18691474-18691626
          Length = 347

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 448 SCPMHSLCRVPSSKRHVQSDPCPA 519
           S P+  LC +PSS+ H  +DP P+
Sbjct: 51  SNPVRHLCGIPSSRCHAAADPAPS 74


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPE 232
           K ++  +PT R  SSW   C+ +      PKLR  PP+
Sbjct: 888 KGEEAPSPTPR--SSWLLPCLKQLQLVECPKLRALPPQ 923


>11_06_0707 + 26467214-26470309
          Length = 1031

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPE 232
           K ++  +PT R  SSW   C+ +      PKLR  PP+
Sbjct: 889 KGEEAPSPTPR--SSWLLPCLKQLQLVECPKLRALPPQ 924


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPE 232
           K ++  +PT R  SSW   C+ +      PKLR  PP+
Sbjct: 704 KGEEAPSPTPR--SSWLLPCLKQLQLVECPKLRALPPQ 739


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPE 232
           K ++  +PT R  SSW   C+++      PKLR  PP+
Sbjct: 889 KGEEAPSPTPR--SSWLLPCLTKLDLVGCPKLRALPPQ 924


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPE 232
           K ++  +PT R  SSW   C+++      PKLR  PP+
Sbjct: 689 KGEEAPSPTPR--SSWLLPCLTKLDLVGCPKLRALPPQ 724


>09_03_0147 +
           12763526-12763815,12763938-12764067,12764185-12764435,
           12764546-12764750,12764878-12764918,12765006-12765131,
           12765429-12765502,12765671-12765891,12766251-12766345,
           12766463-12766679,12766781-12766906,12766988-12767086,
           12767171-12767380,12767496-12767606
          Length = 731

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
 Frame = -2

Query: 631 KDYIRKKNKWLPKLKEWIDKNDPGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALD 452
           +DYI + +K LP     ++   P + +IP  G    K L  D      +L +     A +
Sbjct: 292 QDYILRDDKELPLYSRVVEAKAPMTIVIPVRGSTPIKGLRADDLSWEDFLAKVNHAKADN 351

Query: 451 KIIVQGYKALQLEYFFTAG-ADEVKA--WTIQKGTKAPQAAGRIHTDFEKGFIMA 296
              V+          F++G   E KA  WT     K+  A G  H D  +G ++A
Sbjct: 352 YTAVEQPAYAFTNILFSSGTTGEPKAIPWTHLTPLKS-AADGWCHMDIRRGDVVA 405


>05_05_0254 -
           23638544-23640090,23640280-23640408,23640619-23640626,
           23641442-23642682
          Length = 974

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 316 EKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQGRNYVVED 194
           E+G ++  V  F DFK+E  + A     ++ ++GR +  ED
Sbjct: 774 EEGLLVFRVSEFHDFKDEELDIAPIEIRRFPRRGRGHYGED 814


>04_04_0243 -
           23858975-23860706,23861178-23861230,23861338-23861538,
           23861649-23861990,23862277-23862423,23862945-23863086,
           23863876-23863959,23864772-23864779
          Length = 902

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 78  MTRLKYSMCTRSRRTLSRHFFLASFKPAPALN-LKKMMSPSSTT 206
           M RL+  +CT +   + RH   A  KPA AL  L++M  P++ T
Sbjct: 479 MFRLRLPLCTTTFNIMLRHLCSAG-KPARALELLRQMPRPNAVT 521


>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 649 LVNLSEKDYIRKKNKWLPKLKEWIDKN 569
           L+N +E     K   WL + KEW+D+N
Sbjct: 421 LINTAELLKKEKSTDWLREFKEWMDEN 447


>12_02_0488 +
           19587337-19587648,19587739-19587798,19587876-19587941,
           19588017-19588082,19588253-19588345
          Length = 198

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 365 LNCPGFDFICSSCEEILQLQSLISLNNDLVQC 460
           + C  F+ IC+  E I  LQSL   ++D   C
Sbjct: 1   MECSSFEAICNESEMIAHLQSLFWSSSDADPC 32


>08_02_1457 +
           27260841-27260965,27261126-27261246,27263455-27263543,
           27263776-27263860,27263970-27264074,27264446-27264527,
           27264573-27264686,27265029-27265330,27265519-27266114,
           27266216-27266376,27266489-27266592,27266697-27266856,
           27266942-27267105,27267213-27267545,27267640-27267930,
           27268276-27268359,27268430-27268563,27268665-27268892,
           27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 345 KPQDVSTPTSRRVSSWP--KSCISR 277
           K ++V T TSR +SSW   K+C SR
Sbjct: 392 KSKEVKTSTSRMISSWNIFKACFSR 416


>08_02_0730 - 20472851-20473075,20473332-20474285
          Length = 392

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +3

Query: 159 APALNLKKMMSPSSTT*LRPCCLYFPAALHAASVPSSLKSLKCMTSAMMKPFSKSVWIRP 338
           APAL+L++    S      PC LY PAA  AA+  SS +S +    A  +P++ ++   P
Sbjct: 49  APALDLRRRGVYSFPR--TPCLLYIPAAA-AANGGSSTRSAELYCLADERPYTVTLPDPP 105

Query: 339 AA 344
            A
Sbjct: 106 IA 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,600
Number of Sequences: 37544
Number of extensions: 398209
Number of successful extensions: 1324
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)