Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_C17
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 302 2e-82
Z92806-2|CAB07257.1| 303|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024847-7|AAF60856.2| 261|Caenorhabditis elegans Hypothetical ... 29 4.7
AC199240-1|ABO33278.1| 427|Caenorhabditis elegans Hypothetical ... 28 6.2
Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical p... 28 8.2
Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical p... 28 8.2
U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly glu... 28 8.2
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 28 8.2
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 28 8.2
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 28 8.2
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 28 8.2
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 8.2
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 302 bits (741), Expect = 2e-82
Identities = 140/195 (71%), Positives = 159/195 (81%)
Frame = -2
Query: 748 VDEKKHIRFGDWSAADIEVLNKYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKN 569
++EKK +R W+ +IE+LNK+LFLT+KP +YLVNLSEKDYIRKKNKWLPK+K WID N
Sbjct: 192 LEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKWLPKIKAWIDTN 251
Query: 568 DPGSPLIPFSGVLESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGAD 389
D G+ LIPFSG E KLLDM ER YLKE G+TS LDKI+ GYKALQLEYFFT+G D
Sbjct: 252 DAGAVLIPFSGAFELKLLDMPEDERQKYLKEQGVTSNLDKIVHTGYKALQLEYFFTSGED 311
Query: 388 EVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKYRQQGRN 209
EVKAWTIQ GT AP+AAGRIHTDFEKGFIMAEVM D E G EA CKA GKYRQQG+
Sbjct: 312 EVKAWTIQVGTPAPKAAGRIHTDFEKGFIMAEVMKVADLIELGDEAKCKAGGKYRQQGKT 371
Query: 208 YVVEDGDIIFFKFNA 164
Y+V+DGD+IFFKFNA
Sbjct: 372 YIVQDGDVIFFKFNA 386
>Z92806-2|CAB07257.1| 303|Caenorhabditis elegans Hypothetical
protein K10G4.2 protein.
Length = 303
Score = 31.1 bits (67), Expect = 0.88
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 413 LQLQSLISLNNDLVQCTRYAVFLQVRDTFSRIHVQQFRF-QHSREWNQRRAGVVFVDPLF 589
L L SL L++DL +V+L V TF R V ++ F Q + +AG+ V P+F
Sbjct: 44 LALSSLEMLSSDL------SVWLAVFMTFFRALVMRYPFHQRINSLVKSKAGLCAVIPIF 97
Query: 590 ELW*PFVLF 616
L PF+LF
Sbjct: 98 VLISPFMLF 106
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 427 PYILEQ*SCPMHSLCRVPSSKRHVQSDPCPAI*IPTLQR 543
P+ILE P+HS C +PSS + + P P I +QR
Sbjct: 396 PFILENADDPLHSRCILPSSCPEIPT-PAPEIVEQFVQR 433
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 427 PYILEQ*SCPMHSLCRVPSSKRHVQSDPCPAI*IPTLQR 543
P+ILE P+HS C +PSS + + P P I +QR
Sbjct: 187 PFILENADDPLHSRCILPSSCPEIPT-PAPEIVEQFVQR 224
>AC024847-7|AAF60856.2| 261|Caenorhabditis elegans Hypothetical
protein Y65B4BR.2 protein.
Length = 261
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = -2
Query: 685 KYLFLTSKPALYLVNLSEKDYIRKKNKWLPKLKEWIDKNDPGSPLIPFSGVLESKLLDMD 506
+Y+ L S P Y + +D + KW ++ ++++KN SP+ + L D+D
Sbjct: 191 QYMIL-STPLKYPTMVLTRDLTLFETKWKREVYDFVEKNGFMSPMAALNTRLH--FTDVD 247
Query: 505 PTERVSYLKEHG 470
+V+ L E+G
Sbjct: 248 VCRKVNKLYENG 259
>AC199240-1|ABO33278.1| 427|Caenorhabditis elegans Hypothetical
protein 2L52.1 protein.
Length = 427
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 324 PTSRRVSSWPKSCISRTSRKRVPKLRVKPPENTGNKVVI 208
P+ RR +WPK R S +R + ++PPE N + I
Sbjct: 234 PSKRR--NWPKRVKKRLSTQRNNQKTIRPPELNKNNIEI 270
>Z73422-14|CAD37351.1| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 218 LLPVFSGGFTRSFGTLFLEVLEMHDFGHDETLLEVGVDTSCGLRSLCAFLNCPGFDFICS 397
LLP+ G T + G F+ V+ D G + T + S LR C L G + +
Sbjct: 213 LLPLDQGTLTENCGVTFMVVITKSDLGKEFTDAQF-AKISIQLRKFCLSL---GATLVFT 268
Query: 398 SCEEILQLQSL 430
S +E +Q L
Sbjct: 269 SAKETKNIQLL 279
>Z70307-16|CAC42262.2| 441|Caenorhabditis elegans Hypothetical
protein C39E9.14b protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 218 LLPVFSGGFTRSFGTLFLEVLEMHDFGHDETLLEVGVDTSCGLRSLCAFLNCPGFDFICS 397
LLP+ G T + G F+ V+ D G + T + S LR C L G + +
Sbjct: 213 LLPLDQGTLTENCGVTFMVVITKSDLGKEFTDAQF-AKISIQLRKFCLSL---GATLVFT 268
Query: 398 SCEEILQLQSL 430
S +E +Q L
Sbjct: 269 SAKETKNIQLL 279
>U39850-9|AAM45371.1| 440|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform f
protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 127 LHPLLLQFKLTTSELETNAYPMRRDGSTK 155
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 245 LHPLLLQFKLTTSELETNAYPMRRDGSTK 273
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 260 LHPLLLQFKLTTSELETNAYPMRRDGSTK 288
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 357 LHPLLLQFKLTTSELETNAYPMRRDGSTK 385
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 359 LHPLLLQFKLTTSELETNAYPMRRDGSTK 387
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 657 LYTSLIYLKRTTLEKRTNGYQSSKSGSTK 571
L+ L+ K TT E TN Y + GSTK
Sbjct: 1334 LHPLLLQFKLTTSELETNAYPMRRDGSTK 1362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,832
Number of Sequences: 27780
Number of extensions: 343407
Number of successful extensions: 1169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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