Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C16
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    46   9e-06
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   5.9  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
 Frame = -1

Query: 752 EEXSVLEKLIAIDEKVAVMMASEMLLAGIDTVSFVTTSLLFNLAMNQKVQDKLREE---I 582
           E+ SVL +  + DE++++   S  L A  D  S   T L   LA +  V  K+REE   I
Sbjct: 295 EKPSVLIREFS-DEEISLTFLS-FLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRI 352

Query: 581 RTSESNYK---------RYFRACLKEALRLRH---VVPANLRRTHRDHIVGGYYIPKGID 438
           R  + +            Y RA +KE LRLR    +VP  +++     I   Y +PK   
Sbjct: 353 RKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFP--ITPDYTVPKDAM 410

Query: 437 VIAPNEYLSRSEKFYPRPE*FIPERW 360
           VI          K YP PE F P+RW
Sbjct: 411 VIPTLYGALHDSKVYPEPETFNPDRW 436


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 758 PEEEXSVLEKLIAIDEKVAVM 696
           P EE  +LEKLI I +++AV+
Sbjct: 11  PVEEQPILEKLIGIRQRLAVL 31


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 LFCYLTLINVKLYGLTKVFVNL 174
           +  YL +  V LYG  ++F+NL
Sbjct: 119 ILLYLLICGVSLYGAIRIFINL 140


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 276 YWASDSRIRN--RITYKKINRGI*GHLERSSYQNCQ*IDKYFC*TVQFHVYKC*ITKKEF 103
           YW     I N   I Y+  N     +  R SY N +  DKYF     F  Y   + KK+ 
Sbjct: 228 YWIWSKVIENLAAIGYEPNNMLSASYDWRLSYANLEERDKYFSKLKMFIEYSNIVHKKKV 287

Query: 102 NIISES 85
            +IS S
Sbjct: 288 VLISHS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,067
Number of Sequences: 5004
Number of extensions: 66475
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)