Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C14
         (301 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    34   0.72 
UniRef50_Q7YN77 Cluster: Ribosomal protein S3; n=1; Eimeria tene...    33   1.3  
UniRef50_Q9EMG8 Cluster: AMV238; n=1; Amsacta moorei entomopoxvi...    32   2.9  
UniRef50_O97225 Cluster: Putative uncharacterized protein MAL3P2...    31   3.8  
UniRef50_Q554W2 Cluster: Putative uncharacterized protein; n=12;...    31   6.7  
UniRef50_Q8ILA3 Cluster: Putative uncharacterized protein; n=2; ...    25   6.8  

>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +3

Query: 138 VTKKYWWT*VILNNTYIIHILSYFSTIYIFFGKNNNYNNMYFIRHYF*NVHKFI 299
           + K  W+  ++LNN Y ++I+ Y + I   +  N N N +YFI++ F N + FI
Sbjct: 599 IFKYNWYKYLLLNNKYNLYII-YNNYIKYLYKYNININ-LYFIKNLFYNNNNFI 650



 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 168 ILNNTYIIHILSYFSTIYIFFGKNNNYNNMYFIRHY 275
           I+ N YI ++  Y   I ++F KN  YNN  FI ++
Sbjct: 618 IIYNNYIKYLYKYNININLYFIKNLFYNNNNFIHNH 653


>UniRef50_Q7YN77 Cluster: Ribosomal protein S3; n=1; Eimeria
           tenella|Rep: Ribosomal protein S3 - Eimeria tenella
          Length = 203

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 135 YVTKKYWWT*VILNNTYIIHILSYFSTIYIFFGKNNNYNNMYFIR 269
           Y+  KY++     NN YI +I+ Y   IY+   KN  Y N YFI+
Sbjct: 52  YIQNKYYY-----NNYYIYNIILYSKLIYL---KNKQYINKYFIK 88


>UniRef50_Q9EMG8 Cluster: AMV238; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV238 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 448

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
 Frame = +3

Query: 183 YIIHILSYFSTIYIFF---GKNNNYNNMYFIRHY 275
           ++I  +SY++++YI F    KN N NN+YFI ++
Sbjct: 15  FMIIFISYYNSVYINFISNHKNYNINNIYFIDNF 48


>UniRef50_O97225 Cluster: Putative uncharacterized protein MAL3P2.2;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           MAL3P2.2 - Plasmodium falciparum (isolate 3D7)
          Length = 2226

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 129 SNYVTKKYWWT*VILN-NTYIIHILSYFSTIYIFFGKNNNYNNMYFIRHYF 278
           +NY+TKK     ++ N +TY ++I      I I +  NN Y N+ +I+ Y+
Sbjct: 623 NNYLTKK-----IVENYSTYSLYIKECLLIIDILYILNNTYGNLIYIKEYY 668


>UniRef50_Q554W2 Cluster: Putative uncharacterized protein; n=12;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 659

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 129 SNYVTKKYWWT*VILNNTYIIHILSYFSTIYIFFGKNNNYNNMYFIRHYF*NV 287
           +NY+  K +W  +I+ +  + H+  Y +  + F  + NN +  Y  R+YF NV
Sbjct: 179 NNYILFKKFWGNMIIRDQILFHLRIYNNHNHSFDIRRNNIST-YKYRNYFNNV 230


>UniRef50_Q8ILA3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Plasmodium falciparum (isolate 3D7)
          Length = 1898

 Score = 25.0 bits (52), Expect(2) = 6.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 207 FSTIYIFFGKNNNYNNM 257
           F  I   FGKNNNYN +
Sbjct: 569 FLRIEDLFGKNNNYNKL 585



 Score = 24.2 bits (50), Expect(2) = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 129 SNYVTKKYWWT*VILNNTYIIHILSYFSTI 218
           SNY+   +W+   +LN  +   ++SYF+ I
Sbjct: 522 SNYILS-FWFLLNLLNTPFFYILVSYFNNI 550


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,607,652
Number of Sequences: 1657284
Number of extensions: 3600366
Number of successful extensions: 8057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8041
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)