Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C14
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   2.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   4.2  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   5.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   5.5  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    23   7.3  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    23   9.6  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    23   9.6  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 202 DKICMMYVLFNITYVH 155
           D IC+M  +F +TYVH
Sbjct: 837 DMICVMICVFLLTYVH 852


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 28  FHYIFLYCIINCVST*TYWNLKF*LLWQN*FNLYQIM 138
           FH+I     I CV+     +LKF   + + FNL+Q M
Sbjct: 571 FHHIQFMLSIPCVAEIVREDLKFLKQYADFFNLFQGM 607


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 130 QIMLQKNTGGHKLY*ITRTSY 192
           Q+MLQKN  GH L  +   +Y
Sbjct: 22  QMMLQKNPSGHVLAIVKANAY 42


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/35 (22%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 171 LNNTYIIHI---LSYFSTIYIFFGKNNNYNNMYFI 266
           +N+ +++HI    S+F  +++++      NN +F+
Sbjct: 214 MNDHFLVHIHHPASFFEKMHMYYKTGKTDNNFHFL 248


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 129 SNYVTKKYWWT*VILNNTYIIHILSYFSTIYIFFGKNNNY 248
           +NY   KYW    IL+   I H  +Y + I    G    Y
Sbjct: 208 NNYTYCKYWPFNEILSLKQIRHNQTYTNLINYLLGSGGTY 247


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 83  GI*SFSYYGRTNLTSIKLCYKKILVDISYIK 175
           G+  F  YGR +LT ++    +IL +  YI+
Sbjct: 223 GLILFRDYGRLDLTQLRAKKNRILSENFYIR 253


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 53  SLIVLARKRIGI*SFSYYGRTNL 121
           SL+VL +  +   + +YYG TNL
Sbjct: 228 SLLVLTQTEVDKSNKNYYGETNL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,786
Number of Sequences: 5004
Number of extensions: 16943
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)