Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C14
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    28   1.4  
AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    27   3.3  
AF077530-3|AAC26264.1|  208|Caenorhabditis elegans Hypothetical ...    25   7.6  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    25   7.6  

>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 149 ILVDISYIK*HVHHTYFILLLNY 217
           I  D S++K +VHH  FILL+ Y
Sbjct: 65  IFFDSSFMKLNVHHVAFILLICY 87


>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 150 YWWT*VILNNTYIIHILSYFSTIYIFFGKNNNYNNMY 260
           +W   V ++N++ I +LSY +T Y+   K+  Y   +
Sbjct: 235 HWEKIVFVHNSFFI-VLSYSNTFYVTMWKSGEYRKNF 270


>AF077530-3|AAC26264.1|  208|Caenorhabditis elegans Hypothetical
           protein C40D2.1 protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 243 NYNNMYFIRHYF*NVHKFI 299
           N+NN + ++H F N+ +F+
Sbjct: 143 NFNNSFVLKHTFKNISRFV 161


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 240 NNYNNMYFIRHYF*NVHKFI 299
           +++NN + ++H F N+ KF+
Sbjct: 84  SDFNNSFLLKHTFNNISKFV 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,512,752
Number of Sequences: 27780
Number of extensions: 90210
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)