Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C13
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23MA4 Cluster: TPR Domain containing protein; n=1; Tet...    33   5.2  
UniRef50_P49619 Cluster: Diacylglycerol kinase gamma; n=39; Eute...    33   6.9  
UniRef50_A5CDI2 Cluster: Competence protein F; n=1; Orientia tsu...    33   9.1  

>UniRef50_Q23MA4 Cluster: TPR Domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1830

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 279  IEFSNIELTQLSSEIFVIICKKFSIY*VKNDFGMWLFLCLYLIHREKQL 133
            I+ S  +  QL S+ FVI+C++F  Y VKN   ++L L LY    EK L
Sbjct: 1240 IKLSTNKCDQLDSQQFVIVCREFD-YLVKN-LKLYLSLALYTQQYEKGL 1286


>UniRef50_P49619 Cluster: Diacylglycerol kinase gamma; n=39;
           Euteleostomi|Rep: Diacylglycerol kinase gamma - Homo
           sapiens (Human)
          Length = 791

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 688 GNNSQCCPRC-AMLRCYANITAQMC*WFSKTY 596
           GN+S  C RC   ++CY ++TA+ C W   T+
Sbjct: 342 GNSSVKCDRCHKSIKCYQSVTARHCVWCRMTF 373


>UniRef50_A5CDI2 Cluster: Competence protein F; n=1; Orientia
           tsutsugamushi Boryong|Rep: Competence protein F -
           Orientia tsutsugamushi (strain Boryong) (Rickettsia
           tsutsugamushi)
          Length = 249

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 234 IFQNLVVLIQYLKIQCTEIRTNECTCYISGEFKKINSVVVKGKIAFVTSDVIWVYTMIN 410
           I  N+++  ++ K Q T++   E    ISG FK  NS ++K K   +  DV+   T +N
Sbjct: 170 IKSNILIKYKWTKSQ-TKLTKKERIKNISGSFKINNSEIIKNKKIILLDDVVTTGTTVN 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,874,147
Number of Sequences: 1657284
Number of extensions: 11050033
Number of successful extensions: 21733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21727
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)