Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C13
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.13 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.53 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.93 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 491 VPGTIIGWIEYGIKKLIF*GILQQYPTRISIIA*NICFRKPSTH 622
           +P T +     G K L+F  IL      I+I+  N+ +RKPSTH
Sbjct: 288 IPSTSLALPLLG-KYLLFTMILVGLSVVITIVILNVHYRKPSTH 330


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 KKLIF*GILQQYPTRISIIA*NICFRKPSTH 622
           K LIF  IL      ++++  N+ FR P TH
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQTH 339


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 KKLIF*GILQQYPTRISIIA*NICFRKPSTH 622
           K LIF  IL      ++++  N+ FR P TH
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQTH 339


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 530 KKLIF*GILQQYPTRISIIA*NICFRKPSTHL 625
           K ++F  IL  +   ++++  N+ FR P TH+
Sbjct: 305 KFVLFTMILDTFSICVTVVVLNVHFRSPQTHV 336


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 KKLIF*GILQQYPTRISIIA*NICFRKPSTH 622
           K L+F  IL      I++   N+ FR PSTH
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNVHFRSPSTH 344


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 530 KKLIF*GILQQYPTRISIIA*NICFRKPSTH 622
           K L+F  +L      ++I   N+ FR P TH
Sbjct: 301 KYLLFTMVLVTLSVVVTIAVLNVNFRSPVTH 331


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +2

Query: 245 LSCVNSIFENSMYGNQDK*MYMLYFWRV*KNKFSSSERK 361
           ++C  +I   +   N +K + +++ W+     F S ER+
Sbjct: 13  IACQGAIVRENSPRNLEKSLNVIHEWKYFDYDFGSEERR 51



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 324 EFKKINSVVVKGKIAFVTSDVIWV 395
           EFK  + +V   KIA    D +WV
Sbjct: 115 EFKDCSKIVSAFKIAIDKFDRLWV 138


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 167 RNNHIPKSFFT*YIENFLQIITNISELSCV 256
           +N H+P+     +  ++    TN  E SC+
Sbjct: 202 KNLHLPRFTLEKFFTDYCNSKTNTGEYSCL 231


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 167 RNNHIPKSFFT*YIENFLQIITNISELSCV 256
           +N H+P+     +  ++    TN  E SC+
Sbjct: 202 KNLHLPRFTLEKFFTDYCNSKTNTGEYSCL 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,829
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)