Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C08
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.4  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   5.5  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   7.3  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 611  AALIKLRHMPLVQRSVWNHFNKVSRNISTSKK 516
            AAL  LRH+PL QR +  +  ++  N +  KK
Sbjct: 1231 AALKSLRHLPLSQRILDANVTRLPSNFTDDKK 1262


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 186 LNIITLSNTYGICRRIQYIVKLC*QFVVF 100
           ++++ ++N  G+C+ ++ I K+C Q  VF
Sbjct: 242 VSVMAVNNEIGVCQPLEEIGKICRQKKVF 270


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 470 KNWVSYGFDYTSXEEDTNAHH 408
           KNWV   F  +S ++D   HH
Sbjct: 67  KNWVRQPFSISSRKDDFTLHH 87


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 507 VAVLFRSGNIPTYFVEM 557
           +AVL +S ++PTYFVE+
Sbjct: 100 MAVLAKSIDLPTYFVEL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,958
Number of Sequences: 5004
Number of extensions: 54893
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)