Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C07
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21...    56   3e-08

>04_01_0012 -
           210670-210759,210939-211008,211138-211235,211318-211427,
           211533-211683,212247-212391,212483-212749,212819-212957,
           213036-213270
          Length = 434

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = -2

Query: 742 MRILSFMQMAXTNP-DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVS 566
           MR++S + ++     ++ +  II  L+I + +VE ++++ +  +++  ++DQ  + + VS
Sbjct: 323 MRLMSLLDLSSRCAGEIPYHAIIDALKINDDEVEYWIVKAISCKILDCKVDQLNQVIIVS 382

Query: 565 NTMHRTFGREQWQQLRDVLLAWRAXVHQA 479
               R FG  QWQ LR  L  WR  +  A
Sbjct: 383 RHTERIFGMPQWQSLRSKLGVWRGNIASA 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,252
Number of Sequences: 37544
Number of extensions: 230952
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)