Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C06
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.3  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   4.0  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   4.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.9  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   6.9  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   9.2  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.2  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 620  ANKPGAESTVTAEPYSLQWFVNHYSTTTKK--LTRKHLDRYIYSFSSKSRKLLY 465
            AN P + ST+TA+P + +  +N+ ++  +K  +TRK +   + +     R+  Y
Sbjct: 1537 ANIPNSPSTITAKPLNDEKAINNENSVKQKTVITRKDVVSKVLALFRPHRETYY 1590


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 187 NDEKRMYSNQINVQRANGLRIYDPVLQ*SKTH*LLDQQ 300
           N+  ++Y+N +    A  LRI+D V    KT  +L+++
Sbjct: 25  NETAKLYANVVEALDAQRLRIFDSVAGSLKTEYILEKE 62


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 650 VTNIKPTSTVANKPGAESTVTAEPYSLQWFVNHY 549
           +T+IK     A K GA+  +T E   +QW  N Y
Sbjct: 150 MTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPY 183


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 593 VTAEPY-SLQWFVNHYSTTTKKLTRKHLDRYI-YSFSS 486
           + A P+ +L WF N  S    +L R+ +D Y  Y F +
Sbjct: 649 IGAPPFPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQT 686


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 286 LLDQQADPNTLDFVYITEISFLNDATIT----TLNIKRMCDRNISLSLSHVERCAS 441
           L ++   P +L  ++ + +S++N ++      T+NIKR+ D N         RC S
Sbjct: 169 LSEKSVIPKSLKSLFKSSVSYINQSSKLLAPGTINIKRLKDANFQAPSHSGIRCMS 224


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 328 KQNPM--YSDRLVDLVISESCFTAARDHIFEDRLHAERLFGWNTSFFHRSFDN 176
           KQ+ M  Y D +   +++     A  DHI    LHA ++ G    FF R  DN
Sbjct: 96  KQSKMRKYRDAITARMVANLLTVAGVDHIITLDLHASQMQG----FFTRPVDN 144


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 569 QWFVNHYSTTTKKLTRKHLDRYIYSFSSKSR 477
           QWF+++   + K +T K LDR + +FS + R
Sbjct: 553 QWFLDYGEASWKAVTEKALDR-LNTFSPEVR 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,814
Number of Sequences: 5004
Number of extensions: 59627
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)