Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C06
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    30   1.8  
02_03_0378 + 18327622-18329826                                         28   7.2  
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582...    28   7.2  

>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 650 VTNIKPTSTVANKPGAESTVTAEPYSLQWFVNHYS 546
           V+ +KP  T  N P A S++  EPY L W  ++ S
Sbjct: 595 VSAMKPKDTNVNGP-ASSSIKVEPYKLSWMQDYAS 628


>02_03_0378 + 18327622-18329826
          Length = 734

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 557 NHYSTT-TKKLTRKHLDRYIYSFSSKSRK 474
           N YS+T ++K  RKH + YIY++SS   +
Sbjct: 298 NAYSSTASEKPKRKHEESYIYNYSSSGNE 326


>01_01_0754 -
           5823076-5823089,5823797-5823911,5823992-5824045,
           5825629-5827251
          Length = 601

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 511 IDIFIRFHPNHENYYTFKTNPEIKMRNV 428
           +++F+ FH N E++Y    N  I+  N+
Sbjct: 259 LEVFVSFHSNDEDWYMHPPNEYIEANNI 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,712
Number of Sequences: 37544
Number of extensions: 311606
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)