Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C06
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    29   3.7  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    29   3.7  
AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical...    28   6.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 286 LLDQQA-DPNTLDFVYITEISFLNDATITTLNIKRMCDRNISLSL 417
           +LDQ   D NT++   +T ++ L  + +  +++   CDR+I   L
Sbjct: 226 ILDQPLEDRNTIEMQAVTALAHLKASVLFMMDVSEQCDRSIEEQL 270


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 286 LLDQQA-DPNTLDFVYITEISFLNDATITTLNIKRMCDRNISLSL 417
           +LDQ   D NT++   +T ++ L  + +  +++   CDR+I   L
Sbjct: 226 ILDQPLEDRNTIEMQAVTALAHLKASVLFMMDVSEQCDRSIEEQL 270


>AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical
           protein Y73F8A.1 protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 443 NFGIRFKSIIIFVIWMKTNKYIYRDVFASVFLLSLNNDLRTIGGCRV 583
           N  +  K+ ++FV W+K  K+I  +   S    +L    + IGG  V
Sbjct: 407 NSYLNIKACVVFVAWVKVFKFISVNKTMSQLSSTLTRSAKDIGGFAV 453


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = -2

Query: 653 DVTNIKPTSTVANKPGAESTVTAEPYSLQWFVNHYSTTTKKLTRKHLDRYIYSFSSKSRK 474
           ++ N++        PG ++ V  E   +  F  HY      +TRK   +  Y++  K  K
Sbjct: 651 EIYNVRMPEQFIECPGCKTNVNMETKKI--FEKHYYVPFDPITRKLAKKGYYTYEDKEGK 708

Query: 473 LLY 465
            ++
Sbjct: 709 TIF 711


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,990
Number of Sequences: 27780
Number of extensions: 322215
Number of successful extensions: 769
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)