Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_C06
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -3

Query: 127 HA-FKFNIVVNNRHN 86
           HA F + IV+NNR+N
Sbjct: 480 HADFSYTIVINNRNN 494


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 490 HPNHENYYTFKTNPEIKMRNVQRAKET 410
           +PN E YY  + N  +   +   +K T
Sbjct: 115 NPNTEEYYIIEVNARLSRSSALASKAT 141


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 95  IVYNDIEFESVNF*LL 142
           IV ND  F+ VNF +L
Sbjct: 389 IVNNDFNFDEVNFRIL 404


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 SRAAVKQDSLITRSTSRSEYIGFC 326
           S++     S I+R+++RSE  G+C
Sbjct: 24  SQSQRSSGSSISRNSNRSESSGYC 47


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 SRAAVKQDSLITRSTSRSEYIGFC 326
           S++     S I+R+++RSE  G+C
Sbjct: 24  SQSQRSSGSSISRNSNRSESSGYC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,168
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)