Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B24
         (612 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17EN3 Cluster: Leucine-rich transmembrane protein; n=1...    40   0.035
UniRef50_UPI0000DB74EA Cluster: PREDICTED: similar to Gp150 CG58...    38   0.25 
UniRef50_UPI00015B561B Cluster: PREDICTED: similar to leucine-ri...    37   0.33 
UniRef50_Q6C2H0 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    35   1.8  
UniRef50_UPI0000D57381 Cluster: PREDICTED: similar to CG5820-PD,...    34   2.3  
UniRef50_Q23R94 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q4CME0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q6D9Q6 Cluster: Putative membrane protein; n=1; Pectoba...    32   9.3  
UniRef50_A0LBT0 Cluster: HNH nuclease; n=1; Magnetococcus sp. MC...    32   9.3  

>UniRef50_Q17EN3 Cluster: Leucine-rich transmembrane protein; n=1;
            Aedes aegypti|Rep: Leucine-rich transmembrane protein -
            Aedes aegypti (Yellowfever mosquito)
          Length = 945

 Score = 40.3 bits (90), Expect = 0.035
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = -1

Query: 525  RTRQLRYXSAIIAAMSQPGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHSV 367
            R R  RY  A++A+ +          +VYQ+L+ED+  P TPK+ RYAP+  V
Sbjct: 902  RKRGERYRQALLASKNS---------IVYQKLTEDIVAPKTPKVHRYAPIQQV 945


>UniRef50_UPI0000DB74EA Cluster: PREDICTED: similar to Gp150
           CG5820-PD, isoform D; n=1; Apis mellifera|Rep:
           PREDICTED: similar to Gp150 CG5820-PD, isoform D - Apis
           mellifera
          Length = 886

 Score = 37.5 bits (83), Expect = 0.25
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -1

Query: 459 KDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPEAV 295
           K+CGLVY+ L E++  P  PK   +              Y SS FH++ IVPE+V
Sbjct: 846 KNCGLVYKPLQEEIATPHVPKRGSF--------------YSSSTFHYDKIVPESV 886


>UniRef50_UPI00015B561B Cluster: PREDICTED: similar to leucine-rich
           transmembrane protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to leucine-rich transmembrane protein
           - Nasonia vitripennis
          Length = 887

 Score = 37.1 bits (82), Expect = 0.33
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -1

Query: 459 KDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPEAV 295
           K+CGLVY+ L E++  P  PK   +              Y SS FH++ IVPE+V
Sbjct: 847 KNCGLVYKPLQEEIATPHMPKRGSF--------------YSSSTFHYDKIVPESV 887


>UniRef50_Q6C2H0 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 145

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 438 QQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNI 310
           Q+ + D TG +TPKLS Y PL    V    +SY+S+  H  +I
Sbjct: 47  QEPNHDTTGSSTPKLSIYDPLIKDEVIQKLLSYQSTKTHLKHI 89


>UniRef50_UPI0000D57381 Cluster: PREDICTED: similar to CG5820-PD,
           isoform D; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG5820-PD, isoform D - Tribolium castaneum
          Length = 680

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -1

Query: 474 PGRTKKDCGLVYQQLSEDLTGPATPKLSRY 385
           PG+ KK  G VY+ LSEDL G  TP ++RY
Sbjct: 639 PGQ-KKHSGSVYRPLSEDLYGSRTPIINRY 667


>UniRef50_Q23R94 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1170

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = -1

Query: 528  SRTRQLRYXSAIIAAMSQPGRTKKDCGLVYQQLSE--DLTGPATPKLSRYAPLH----SV 367
            S+T  ++  S +   ++Q  R      L YQ + +  D+  P    LS +A LH    ++
Sbjct: 798  SKTEDVKTISQLQEELTQANRKINQFELEYQNMKKTYDVFKPQPQPLSSHAALHQIINNI 857

Query: 366  TVNASNMSYESSPFHHNNIV 307
             +NAS++   ++ F HN ++
Sbjct: 858  QLNASSIVIPNNNFSHNQVI 877


>UniRef50_Q4CME0 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 232

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 475 TRPHQKGLRLGIPAVVRRPHRSGHSKTKPICSTSQRHCQC-IQHVL*EQSLPPQQHR 308
           +R HQ G+  G PA  RR +R GH    P+C   Q    C +  +L    L P+Q R
Sbjct: 96  SRGHQ-GVSHGPPAA-RRSYRGGHDCVPPVCGELQLRASCLLVRLLARCMLAPKQTR 150


>UniRef50_Q6D9Q6 Cluster: Putative membrane protein; n=1;
           Pectobacterium atrosepticum|Rep: Putative membrane
           protein - Erwinia carotovora subsp. atroseptica
           (Pectobacterium atrosepticum)
          Length = 160

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 187 CVTSAYILSLVA*KRVSSVVSFMI*LLKIKFCTCGSHCFWHDVVVVEGTALIGHVGCIDS 366
           CV  +  LS +A + + +V SF   L+ I  C  G + FW    + +G    GH G + +
Sbjct: 95  CVNKSVALSEIAHRDLKNVNSFYCFLVLISMCIEGVYRFWLSHKMSKGVYGYGHGGAVSA 154


>UniRef50_A0LBT0 Cluster: HNH nuclease; n=1; Magnetococcus sp.
           MC-1|Rep: HNH nuclease - Magnetococcus sp. (strain MC-1)
          Length = 104

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 526 KNQAAQIXQCHYCSDESTRPHQKGLRLGIPAVVRRPHRSGHSKTKPICSTSQRH 365
           KNQ  +  QC+YC     R H K L +     + R  RS HS   P C     H
Sbjct: 35  KNQLGR-GQCYYCQ---RRYHPKELTMDHVQPISRGGRSSHSNCVPCCGECNEH 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,194,157
Number of Sequences: 1657284
Number of extensions: 9485821
Number of successful extensions: 24039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24023
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)