Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B23
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 157 1e-39
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 151 6e-38
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.74
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.98
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 27 1.3
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 2.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 3.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.1
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 9.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.1
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 9.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 9.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 9.1
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 157 bits (380), Expect = 1e-39
Identities = 80/124 (64%), Positives = 94/124 (75%), Gaps = 1/124 (0%)
Frame = -3
Query: 417 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 238
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 61
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119
Query: 60 GTKK 49
GT K
Sbjct: 120 GTGK 123
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 151 bits (366), Expect = 6e-38
Identities = 75/124 (60%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = -3
Query: 417 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 238
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 237 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 61
+T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119
Query: 60 GTKK 49
GT K
Sbjct: 120 GTGK 123
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 382 FASANSRCSFTHFELFSII 438
F+S SRCSFT FE+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.98
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 165 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 67
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 422 SK*VKEQRLFALANS*PTDCWRASRWFAMFY--IQENQLSARPRSVR 288
+K VK++R+ AL N WR W A ++ IQ+ + S P S R
Sbjct: 149 TKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 300 EIREKLAKMYKVTPDVVFVFGFKTNFGG 217
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 177 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKK 49
D KK + +L ++KR R + +K K+ +KKV GTKK
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKK 199
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -3
Query: 171 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 67
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 253 SVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 110
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 218 PPKFVLKPNTNTTSGVTLYILASFS 292
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 9.1
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -3
Query: 165 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 64
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 211 FATSEVCLETEYEHYIGSNL 270
+A SE LE EYE +GS L
Sbjct: 1296 YAASENILEIEYEDEVGSGL 1315
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 290 SRISVLLTVGFPGCKTSQTICLRANNL 370
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -3
Query: 123 EKKRPTRKQRKERKNRMKKVRGT 55
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 36 TYFRISWYRGPSSFCSYVLYAVCAW 110
T ++++ + G S+ +Y +Y+VCA+
Sbjct: 2001 TAYQLTLFTGTSNIQTYEIYSVCAF 2025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,771
Number of Sequences: 5004
Number of extensions: 46141
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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