Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B23
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 170 5e-43
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 167 6e-42
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 9e-37
05_05_0006 + 21450739-21451434 31 0.75
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.3
01_06_0355 + 28657833-28660665,28660762-28661126 29 3.0
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 5.3
11_04_0350 - 16658497-16659015 27 7.0
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 27 7.0
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 27 7.0
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 7.0
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 9.2
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 27 9.2
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 170 bits (414), Expect = 5e-43
Identities = 79/118 (66%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
Frame = -3
Query: 399 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 223
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 222 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKK 49
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKK 128
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 167 bits (405), Expect = 6e-42
Identities = 78/118 (66%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Frame = -3
Query: 399 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 223
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 222 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKK 49
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKK 128
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect(2) = 9e-37
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = -3
Query: 399 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 223
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 222 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 136
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 39.9 bits (89), Expect(2) = 9e-37
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -3
Query: 135 HGLYEKKRPTRKQRKERKNRMKKVRGTKK 49
+GL K +RKQ KERKNR KK+RG KK
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRGVKK 156
>05_05_0006 + 21450739-21451434
Length = 231
Score = 30.7 bits (66), Expect = 0.75
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +3
Query: 24 LGGRTYFRISWYRGPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSW 170
LGGR R PSS S A A+ S+S TG T ++ SW
Sbjct: 55 LGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASATTVDSSKESW 103
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 205 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 104
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 239 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 418
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 290 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 418
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -3
Query: 123 EKKRPTRKQRKERKNRMKKVRGTKK 49
+KK+ +K++K++K + KKVR T++
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYTQE 60
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 47 NFLVPRTFFILFLRSLRCLRVGLFFSYRPW 136
NFL+ LFL +L +R G+FF + W
Sbjct: 462 NFLMTTAVAQLFLATLCRMRAGIFFFFAAW 491
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 123 EKKRPTRKQRKERKNRMKKVRGTKK 49
+KK+ +K++K++KN+ KK + KK
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKK 99
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 132 GLYEKKRPTRKQRKERKNRMKK 67
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 265 YSRCSVRIR-FQDKLRRWQINWI 200
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 344 FAMFYIQENQLSARPRSVRSSPKCTRL 264
F++ + ++N+ + PRS S+PKC L
Sbjct: 381 FSIQFYKKNETATSPRSSSSAPKCDSL 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,791
Number of Sequences: 37544
Number of extensions: 313370
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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