Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B21
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-3|CAC42276.1|  712|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z66511-2|CAA91315.1|  725|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    28   5.5  
Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z66511-3|CAC42276.1|  712|Caenorhabditis elegans Hypothetical
           protein F07A11.2b protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 549 LTIGNLNEFGRPIYRRNHCNLNLSKKKELS-RKVFVYSTNWLDMFEISIT 403
           LTIG  N  G  I R +HC ++++   E+       Y++  L +   ++T
Sbjct: 472 LTIGVTNTVGSSICRESHCGIHINAGPEIGVASTKAYTSQILSLLMFALT 521


>Z66511-2|CAA91315.1|  725|Caenorhabditis elegans Hypothetical
           protein F07A11.2a protein.
          Length = 725

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 549 LTIGNLNEFGRPIYRRNHCNLNLSKKKELS-RKVFVYSTNWLDMFEISIT 403
           LTIG  N  G  I R +HC ++++   E+       Y++  L +   ++T
Sbjct: 485 LTIGVTNTVGSSICRESHCGIHINAGPEIGVASTKAYTSQILSLLMFALT 534


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 286 YVFTFKLLQYPAYVP*HFKLIIFYCVVQEKMSQTTLLLVCNTY 414
           Y   F  L+   Y P + KLI+F+ +V    +++T+L+ C  Y
Sbjct: 178 YAGQFGNLREFQYYPMNNKLILFFALVTFGTTKSTVLITCLVY 220


>Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical
           protein F22B3.4 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 549 LTIGNLNEFGRPIYRRNHCNLNLSKKKEL---SRKVFVYSTNWLDMFEISIT 403
           LTIG  N  G  I R +HC ++++   E+   S K +      L +F ++I+
Sbjct: 470 LTIGVTNTVGSSIGRESHCGIHINAGPEIGVASTKAYTSQIVSLLLFALTIS 521


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 473 KKNLVVKCSCTQLTGLICLK*VLHTNNRV 387
           ++NL +  SCT+L  + C    LH N RV
Sbjct: 410 RRNLYISTSCTELLSVNCTH--LHVNQRV 436


>Z48178-5|CAA88205.1|  413|Caenorhabditis elegans Hypothetical
           protein C05C10.4 protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 558 LIRLTIGNLNEFGRPIYRRNHCNLNLSKKKELSRKVFVYSTNW 430
           L  + +G +NE G  I +R    L     K  SR+V+  STN+
Sbjct: 62  LTAIGMGEMNELGWLIRKRYVTKLKFLTPKYASREVYFRSTNF 104


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 546 TIGNLNEFGRPIYRRNHCNLNLSKKKELSRKV 451
           T+      GR +YRRN+ N ++S+++  S  V
Sbjct: 216 TVSTGRSRGRSVYRRNNVNADVSQRQSRSMSV 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,196
Number of Sequences: 27780
Number of extensions: 235076
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)