Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B20
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.0  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   SRYYLTFSRNKHNNKDLDDYIYINI 79
           + Y   ++ N +NN + +  +Y NI
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   SRYYLTFSRNKHNNKDLDDYIYINI 79
           + Y   ++ N +NN + +  +Y NI
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   ISRYYLTFSRNKHNNKDLDDYIYINITF 85
           +S  Y++   N +NN + +  +Y NI +
Sbjct: 85  LSNNYISNISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   ISRYYLTFSRNKHNNKDLDDYIYINITF 85
           +S  Y++   N +NN + +  +Y NI +
Sbjct: 323 LSNNYISNISNYNNNNNYNKKLYYNINY 350


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 484 QPSVRHEQTSCLPPNPDR 537
           QP  RH +    PP PDR
Sbjct: 242 QPE-RHYERRATPPQPDR 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,280
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)