Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B16
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   191   7e-50
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.85 
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    26   4.5  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   6.0  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   7.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.9  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   7.9  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  191 bits (466), Expect = 7e-50
 Identities = 92/162 (56%), Positives = 117/162 (72%)
 Frame = -2

Query: 701 RGLGKLMRLKSKVAPFINQIASLFGLADFNSDMFSNXMDEMLSVIRQVNAQFKDPNQTTF 522
           + LGKL  L S+  P INQ+ S+ G+     D+F   M+ M + I +VN QFK+P+ TTF
Sbjct: 166 KALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGK-MESMRANISEVNKQFKNPDLTTF 224

Query: 521 VCVCIAEFLSLYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQ 342
           VCVCI+EFLSLYETER++QELT   IDTHNI+VNQLLL  +  C  C AR K+Q+KYL Q
Sbjct: 225 VCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQ 284

Query: 341 IADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPYDPPTS 216
           I +LYEDFHV K+P +  EVRG  A+ +FSE+L+KPY  PTS
Sbjct: 285 IEELYEDFHVVKVPQVPAEVRGTEALKSFSEMLVKPYVYPTS 326


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 469 TKRSVS*SDRNSAIQTHTNVV*FGSLNCAFTCL 567
           TK  +  SD   ++++  NVV FG+LN   +CL
Sbjct: 778 TKLDLRLSDVTDSVRSRINVVKFGNLNSLLSCL 810


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 576 ISYQTSECTVQRPESNY 526
           ++YQ SECT+ + E+N+
Sbjct: 410 LAYQVSECTITKEETNW 426


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = -2

Query: 629 GLADFNSDMFSNXMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE--RLVQELT 456
           G AD    +    + +M+S I  V+  F    +   +  C+ EF+ L  +E   + ++  
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCV-EFIHLVSSEANEICEKEA 62

Query: 455 RCGIDTHNIIV---NQLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKE 285
           +  I   +II    N       A     AA HK Q+K  E+ +  +E   V++  LL ++
Sbjct: 63  KKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDELLRQQ 122


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 677 LKSKVAPFINQIASLFGLADFNSDMFSNXMDEMLSVIRQVNAQFKD 540
           LK+KV PFIN++     L        S  + E +  +  + A+ +D
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 419 QLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKE 285
           Q + R+    E C  + K Q+K L  + + YE +   K   LEKE
Sbjct: 482 QAVSRAKTQLEKCKKQAKSQQKSLPYLEEQYEKYR-AKAADLEKE 525


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 368 KVQEKYLEQIADLYEDFHVTK 306
           K+Q+KY  QI ++ +  HVTK
Sbjct: 433 KIQKKYQNQIENMKKGSHVTK 453


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 581 MLSVIRQVNAQFKDPNQTTFVCVCIAE 501
           ML +IR V + F+DP + T +   ++E
Sbjct: 181 MLQIIRAVLSNFEDPTEITLLYANVSE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,469
Number of Sequences: 5004
Number of extensions: 57879
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)