Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B16
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   5.3  
AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant r...    23   7.0  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   9.3  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = -2

Query: 515 VCIAEFLSLYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQIA 336
           VCI   +S  E +RLV+E+ R      ++IV+++ L   +   +     +++E  +  I 
Sbjct: 615 VCINTLVSEEEGQRLVREMKR----KFSVIVDKVELPDESGEPVVENPKQIEEAVMNLIT 670

Query: 335 DLYED 321
           +L  D
Sbjct: 671 NLQPD 675


>AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant
           receptor Or3 protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 222 YILHVKPILSITNVKDVIITNMFYLMVMLNTNYWYG 115
           ++LH++  L   N++  +    FY+ +M  T Y  G
Sbjct: 183 HVLHLEEELYFLNIRTSMAHYTFYVAIMWPTIYTLG 218


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 216 LHVKPILSITNVKDVIITNMFYLMVMLNTNYW 121
           LHV   L+I +   +   NM Y + M    YW
Sbjct: 21  LHVGMDLTIASFDAISEVNMDYTITMYLNQYW 52


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,675
Number of Sequences: 2352
Number of extensions: 14657
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)