Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B14
         (590 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q33578 Cluster: CR5; n=1; Trypanosoma brucei|Rep: CR5 -...    34   2.2  
UniRef50_Q7NB09 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_A0R9R9 Cluster: Possible sensor histidine kinase domain...    33   6.6  
UniRef50_Q54AX6 Cluster: Chloride channel protein; n=2; Dictyost...    32   8.7  
UniRef50_A3FPX8 Cluster: Multi-pass transmembrane protein, putat...    32   8.7  

>UniRef50_Q33578 Cluster: CR5; n=1; Trypanosoma brucei|Rep: CR5 -
           Trypanosoma brucei
          Length = 150

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 318 NYYIQFDIIILSVLLCQF*ILLVTTLKILPFFFVLITFYFPFRFYFL 178
           N  + F  + L  + C F +LL + + +L F FV++ FYF + F FL
Sbjct: 59  NSRLVFYTLDLCFVSCLFFVLLNSIICVLLFVFVIVLFYFCYGFLFL 105


>UniRef50_Q7NB09 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma gallisepticum|Rep: Putative uncharacterized
           protein - Mycoplasma gallisepticum
          Length = 596

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 297 IIILSVLLCQF*ILLVTTLKILPFFFVLITFYFPFRFY 184
           +I +S+LL    + L+T L +L F F+L+ FY  FRF+
Sbjct: 4   MITISILLMYLIVGLLTALTVLIFVFILLKFY-EFRFF 40


>UniRef50_A0R9R9 Cluster: Possible sensor histidine kinase domain;
           n=2; Bacillus cereus group|Rep: Possible sensor
           histidine kinase domain - Bacillus thuringiensis (strain
           Al Hakam)
          Length = 610

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 333 IGRIFNYYIQF-DIIILSVLLCQF*ILLVTTLKILPFFFVLITFYFPFRFYFLTRKLDF 160
           I   + Y+I F   I +++ L +  I   +T+ IL   F+ IT YFP RF+  T  L F
Sbjct: 13  IASSYLYFISFLGFITITISLLEIKIPSHSTILILLLIFMGITEYFPVRFWRGTSSLTF 71


>UniRef50_Q54AX6 Cluster: Chloride channel protein; n=2;
           Dictyostelium discoideum|Rep: Chloride channel protein -
           Dictyostelium discoideum AX4
          Length = 863

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 128 PCRSLTNRNGQKSNFLVXXXXXXXXXXVINTKKNGSIFKVVTN 256
           PCRS T  NG ++N L             N+K +  +FK++ N
Sbjct: 430 PCRSKTQANGSQTNSLDTSSSSILSSSGDNSKNSTKLFKLLNN 472


>UniRef50_A3FPX8 Cluster: Multi-pass transmembrane protein,
           putative; n=3; Cryptosporidium|Rep: Multi-pass
           transmembrane protein, putative - Cryptosporidium parvum
           Iowa II
          Length = 440

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 324 IFNYYIQFDIIILSVLLCQF*ILLVTTLKILPFFFVLITFYF 199
           +F Y+ Q   +++S+LL  +  +++     +P +F L+ ++F
Sbjct: 366 VFGYFFQIYFLLISILLYGYVEVIIRLFNCIPLYFTLMGYFF 407


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,424,211
Number of Sequences: 1657284
Number of extensions: 5709765
Number of successful extensions: 11215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11099
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)