Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B12
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 266 4e-72
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 141 1e-34
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 136 3e-33
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 136 3e-33
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 124 1e-29
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 116 6e-27
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 114 1e-26
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 29 0.84
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 5.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 7.8
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 266 bits (651), Expect = 4e-72
Identities = 131/240 (54%), Positives = 171/240 (71%), Gaps = 1/240 (0%)
Frame = -2
Query: 758 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVT 579
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D ++V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 578 HLFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 399
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L +R+A+I+QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 398 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 219
A MRPLG +M L+A DDE GP ++K DP+G+Y YKA +AG K + +LEK+ KK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDG 185
Query: 218 DLST-DDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETEIDRHLTAIAEKD 42
S D ++ I L LS DFKS+E++IGVV D P FRVL+ EI+ HL +IAEKD
Sbjct: 186 IPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 141 bits (341), Expect = 1e-34
Identities = 84/211 (39%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 743 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFAL 564
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L AS+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 563 TDRIGCVMTGMIADSRSQV*RARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAE 390
T IG V +GM D R V ++R + A YK Y P IL + IA + Q TQ+
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGG 126
Query: 389 MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLS 210
+RP G S+ L+A DE GP +Y+ DPSG Y ++KA A G + +LEK+ +L
Sbjct: 127 VRPFGVSL-LVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRY--NDELE 183
Query: 209 TDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 117
DDA+ AI L + + IEI VVS
Sbjct: 184 LDDAVHTAILALKETFEGELTEDNIEIAVVS 214
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 136 bits (330), Expect = 3e-33
Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 2/227 (0%)
Frame = -2
Query: 764 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PA 588
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 587 SVTHLFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQV 408
S L+ + D + C + G+ AD+ + AR + + E+P L RR+ D+ Q
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 407 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLK 228
YTQ +RP G S + +D G +++++PSG Y S++A + G + + + ++ K
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYK 180
Query: 227 KRSDLSTDDAIQLAISCLSQVL-SVDFKSSEIEIGVVSKDNPKFRVL 90
D++ D+A +A+ LS+ L S +IE ++KD K +++
Sbjct: 181 --DDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDTTKNKMV 225
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 136 bits (330), Expect = 3e-33
Identities = 74/215 (34%), Positives = 124/215 (57%), Gaps = 1/215 (0%)
Frame = -2
Query: 761 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASV 582
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK +L + ++
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPKLQNVSNF 60
Query: 581 THLFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYT 402
+ + + + G+ AD+R + +AR EA N + + + L R +A + Q YT
Sbjct: 61 QKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYT 120
Query: 401 QNAEMRPLGCSMMLIAYD-DEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKK 225
Q+ +RP G S ++ +D + P VY+T+P+G Y ++KA A G + YLEK K+
Sbjct: 121 QSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKE 180
Query: 224 RSDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVV 120
LS D+ I LA+S L +V V S IE+ ++
Sbjct: 181 --GLSRDETIHLAVSSLLEV--VQTASGNIELAIM 211
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 124 bits (300), Expect = 1e-29
Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 6/248 (2%)
Frame = -2
Query: 755 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 576
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 575 LFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 396
LF + IGC ++G+ AD+R+ + AR + N ++ Y + + I D++ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 395 AE------MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKK 234
+ RP G + +LIA DE GP +Y ++PSG Y Y+A A G+ + + L K+
Sbjct: 127 EDGEERIMSRPFGVA-LLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKE 185
Query: 233 LKKRSDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVSKDNPKFRVLTETEIDRHLTAI 54
K D++ ++A L + L QV+ S +++ V+ + F + + E+ A+
Sbjct: 186 FHK--DMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEG-GFHIYNDEEM---ADAV 239
Query: 53 AEKD*RVD 30
A + R+D
Sbjct: 240 AREQQRMD 247
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 116 bits (278), Expect = 6e-27
Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 2/239 (0%)
Frame = -2
Query: 755 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 576
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + +
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKK 62
Query: 575 LFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 396
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 395 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 216
RP G ++I Y DE+GP + + PSG Y + G+++ Y+E+ L D
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 215 LSTDDAIQLAISCLSQVLSVDFKSSE--IEIGVVSKDNPKFRVLTETEIDRHLTAIAEK 45
S ++ I A+ L LS D + +E + I V+ KD K+ + + + L + +K
Sbjct: 182 SSREELILSALRALRDTLSKDQELTEENVSISVIGKDE-KYTLYDQNDTKEWLDKLGDK 239
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 114 bits (275), Expect = 1e-26
Identities = 68/200 (34%), Positives = 101/200 (50%)
Frame = -2
Query: 773 SRSSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD 594
S G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL
Sbjct: 2 SSIGTGYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLK 59
Query: 593 PASVTHLFALTDRIGCVMTGMIADSRSQV*RARYEAANWQYKYGSEIPVHILCRRIADIS 414
P + ++ IG TG I D + V RAR EA +W+ YGS IP ++ R+ +
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYV 119
Query: 413 QVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKK 234
Q++T + +RP G + YD E GP +Y +P+G Y Y AAG LEK
Sbjct: 120 QLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK- 177
Query: 233 LKKRSDLSTDDAIQLAISCL 174
S L DA++ A L
Sbjct: 178 -LNFSSLKMKDAVKEAARIL 196
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 483 QLAVQVW--VRDTCAYLMQTHS*YLSSLHPKCRDETSGL 373
QLA ++W +RDTC++L + Y+ S+ +D L
Sbjct: 530 QLATEIWAVLRDTCSFLQGSSGPYVGSVSTIAKDALESL 568
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 482 WQPHSELVILETGYQQSSR 538
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 583 TEAGSSSLSGTLR*AATTAASVPRNATDVNPPWFIAFNAYST*YSLPS 726
T + SSS S AA +S ATD+ PP+ A ++ YS PS
Sbjct: 295 TASSSSSFSSKREEAAAEPSS--STATDIPPPYSTPSVAGASDYSTPS 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,296
Number of Sequences: 5004
Number of extensions: 60900
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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