Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B09
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    29   0.55 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.0  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   5.2  
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom...    26   5.2  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   6.8  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   6.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   6.8  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 554 LSSINASQCIVNLEASERTISCLTAAIASFTVAFGYIKT 670
           LSS+N+ Q    L A ER++SC  + I SF +  GY+ +
Sbjct: 199 LSSLNSWQ----LAAFERSVSCCKSFIVSFMILKGYLNS 233


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 141 NALTITTSLLSGFRKDFTQHLNYTI 215
           N LT++  LLS +R DF Q++  +I
Sbjct: 765 NPLTLSKKLLSSWRDDFAQYITNSI 789


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 117 HMKKNESFNALTITTSLLSGFRKDFTQHLNYTIVI 221
           H  K+ +F  LT    L  GF+  F  HL +T ++
Sbjct: 97  HRHKSNTFARLTAAVFLQKGFKTYFFDHLVHTPLV 131


>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 694 MYAAFAFXILDCFRKRVFIRY 756
           +YA  AF ILD   KR+F +Y
Sbjct: 5   LYAVNAFLILDSSGKRIFTKY 25


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 678 SSSVFIYPKATVKEAIA--AVKQDIVRSLASRFTMHCDALIDDNLLPEEKICFNE 520
           S+ V +YP+ T  + ++       +VR  AS+ T H D+    + LP   I   E
Sbjct: 34  SNFVPVYPEPTYSDTVSKKGTIVRVVRHTASKLTKHGDSSQSLSTLPNNDISVGE 88


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 123 SCVRCVVLFIMSKNNYLYTNMVTKYI 46
           +CVRCV   IM+K+ YL +     Y+
Sbjct: 372 ACVRCVEKGIMTKDLYLLSKSPNGYV 397


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 TLHMKKNESFNALTITTSLLSGFRKDFTQHLNYTIVIMNYNRN 239
           TL  + +++ + L  T    +  RK+ ++  NY++   N +RN
Sbjct: 342 TLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRN 384


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 446 AEALLSVRELLDLKITETDVICDVETPADTSEFDAL 339
           AE ++ +RE+L  +     +IC +E     + FD++
Sbjct: 225 AEDVIHIREVLGEEGKNIKIICKIENQQGVNNFDSI 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,295
Number of Sequences: 5004
Number of extensions: 56285
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)