Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B09
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 57 2e-08
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 46 3e-05
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 30 2.3
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 30 2.3
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 29 4.1
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 29 5.4
05_03_0011 - 7346191-7346706 29 5.4
03_02_0246 - 6772369-6772808,6773223-6775788 29 5.4
05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447 28 9.4
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 56.8 bits (131), Expect = 2e-08
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Frame = -1
Query: 768 VSLFVPYENTLP-ETVEYXECEGSIHFSGVVSSSVFIYPKATVKEAIAAVKQDIVRSLAS 592
V VP++N LP E G + F+G VS+ ++ PK ++ E I+ +K DI+ SL S
Sbjct: 248 VEFLVPFKNNLPAEECSLEGVAGLLLFAGSVSALAYLGPKESIAEVISDLKLDIITSLRS 307
Query: 591 RFTMHCDALIDD-------NLLPEE--KICFNE-------P-PRRVLVP-VGSLYLCDYL 466
R + D DD N L ++ ++ F+E P PRR+L+P + Y+CDYL
Sbjct: 308 RLDIILDEADDDSTTNNLENSLSQKATQVVFHELRVPYSFPFPRRILIPWLAGSYICDYL 367
Query: 465 XPWRSTGRSVTFC 427
+T ++ C
Sbjct: 368 QQSETTEDAMERC 380
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 46.4 bits (105), Expect = 3e-05
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 18/98 (18%)
Frame = -1
Query: 705 GSIHFSGVVSSSVFIYPKATVKEAIAAVKQDIVRSLASRFTMHCDALIDD-------NLL 547
G + F+G VS+ ++ PK ++ E I+ +K DI+ SL SR + D DD N L
Sbjct: 169 GLLLFAGSVSALAYLGPKESIAEVISDLKLDIITSLRSRLDIILDEADDDSTTNNLENSL 228
Query: 546 PEE--KICFNE---P-----PRRVLVP-VGSLYLCDYL 466
++ ++ F+E P PRR+L+P + Y+CDYL
Sbjct: 229 SQKATQVVFHELRAPYSFPFPRRILIPWLAGSYICDYL 266
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1
Query: 681 VSSSVFIYPKATVKEAIAAVKQDIVRSLASRFTMHCDALI 562
+ ++V YP VK + A KQ+I R++ SR+T DA+I
Sbjct: 265 LGATVVTYPLLVVKSRLQA-KQEIGRNVMSRYTGTIDAII 303
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -1
Query: 681 VSSSVFIYPKATVKEAIAAVKQDIVRSLASRFTMHCDALI 562
+ ++V YP VK + A KQ+I R++ SR+T DA+I
Sbjct: 417 LGATVVTYPLLVVKSRLQA-KQEIGRNVMSRYTGTIDAII 455
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 564 IDDNLLPEEKICFNEPPRRVLVPVGSLYLC-DYLXPWRSTGRSVTFCSGTI 415
IDDN+ E IC E +V++P S +C WRS +S FC ++
Sbjct: 158 IDDNIEEECGICM-EINGKVVLPTCSHAMCIKCYRDWRSRSQSCPFCRDSL 207
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 407 KITETDVICDVETPADTSEFDALD 336
KI DVIC++ET T EF++L+
Sbjct: 178 KIEVGDVICEIETDKATLEFESLE 201
>05_03_0011 - 7346191-7346706
Length = 171
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 299 VALPTIPHYLHLDLGRQTRK 358
V LP PHY++LD+G TRK
Sbjct: 119 VDLPPPPHYVYLDIGWITRK 138
>03_02_0246 - 6772369-6772808,6773223-6775788
Length = 1001
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 284 TGSLPVALPTIPHYLHLDLG 343
TG+LP ALP + + +HL LG
Sbjct: 142 TGALPAALPNLTNLVHLHLG 161
>05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447
Length = 458
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 542 SGRRLSSINA---SQCIVNLEASERTISCLTAAIASFTVAFGY-IKTLDDTTPLKC 697
SG R + +N S I++ E SER + L A + AFGY ++ L +P C
Sbjct: 371 SGLRYAFLNGDAESPVIISDELSERETTRLIAVLEKHCAAFGYSLQDLKGISPTLC 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,231
Number of Sequences: 37544
Number of extensions: 331762
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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