Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B08
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.53 
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   2.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   3.7  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   4.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   8.6  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 LNCIKIRCDFSKLFRDFLSRMTNQH 474
           L+C K  C F+ ++ DF S +TN +
Sbjct: 828 LSCSKYMCSFTFIYSDFTSNITNNY 852


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 120 LMSFDLLLVEGNLLXSSAPSGLLVVPFASCRSIHLL*QLPFYRRYHRLLES 272
           + S  LL    +L  +S   G+L+ PF +  S+++      + R HR L S
Sbjct: 3   ISSSSLLCGINSLKYASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSS 53


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 146 HQEQIKRHEDAIRRHKEQMSDIE 78
           H+E+IK  E+ +   K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 243 KMEAAREDEYFYKKQKEQLANLK 175
           K+EA ++ E  YK + ++LANL+
Sbjct: 374 KLEAKKQKEKVYKDKLDELANLE 396


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 135 LLLVEGNLLXSSAPSGLLVVPFASCRSIHLL*QLPFYRRYHR 260
           L++ E N   SS    LLV P     +I +L  LP + R+H+
Sbjct: 440 LIISEINENFSSVTVSLLVAPIWVFDAIAILTVLPLHDRFHK 481


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 373 KEIHDFL*CLNCIKIRCDFSKLFRDFLSRMTNQHT 477
           KE+   +   + + I C+FS L RDF   + N++T
Sbjct: 13  KELEKHVDSAHYVSIDCEFSGLLRDF--NLNNKNT 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,599
Number of Sequences: 5004
Number of extensions: 30710
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)