Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B08
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF326939-1|AAG49389.1|  109|Caenorhabditis elegans mitochondrial...    52   3e-07
AF038604-5|AAB92010.1|  109|Caenorhabditis elegans Hypothetical ...    52   3e-07
U49941-7|AAB53875.1|   88|Caenorhabditis elegans Mitochondrial a...    36   0.017
L12348-1|AAA28107.1|   88|Caenorhabditis elegans ATPase inhibito...    36   0.017
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    30   1.1  
Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical pr...    29   1.5  

>AF326939-1|AAG49389.1|  109|Caenorhabditis elegans mitochondrial
           ATPase inhibitor protein.
          Length = 109

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -1

Query: 249 FGKMEAAREDEYFYKKQKEQLANLKGHLXQ 160
           FGKMEAAREDEYFYKKQK QL  L+ H+ +
Sbjct: 44  FGKMEAAREDEYFYKKQKAQLQELREHIQE 73


>AF038604-5|AAB92010.1|  109|Caenorhabditis elegans Hypothetical
           protein B0546.1 protein.
          Length = 109

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -1

Query: 249 FGKMEAAREDEYFYKKQKEQLANLKGHLXQ 160
           FGKMEAAREDEYFYKKQK QL  L+ H+ +
Sbjct: 44  FGKMEAAREDEYFYKKQKAQLQELREHIQE 73


>U49941-7|AAB53875.1|   88|Caenorhabditis elegans Mitochondrial
           atpase inhibitorfamily protein 1 protein.
          Length = 88

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -1

Query: 252 TFGKMEAAREDEYFYKKQKEQLANLKGHL 166
           + G M A RE+EYF ++QK+QL NLK  L
Sbjct: 26  SLGMMGATREEEYFRRQQKDQLDNLKKKL 54



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 143 QEQIKRHEDAIRRHKEQMSDIEK 75
           Q++I+ HE  + +H++++ +IEK
Sbjct: 62  QQEIRDHEKVLEQHQQRLKEIEK 84


>L12348-1|AAA28107.1|   88|Caenorhabditis elegans ATPase inhibitor
           protein.
          Length = 88

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -1

Query: 252 TFGKMEAAREDEYFYKKQKEQLANLKGHL 166
           + G M A RE+EYF ++QK+QL NLK  L
Sbjct: 26  SLGMMGATREEEYFRRQQKDQLDNLKKKL 54



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 143 QEQIKRHEDAIRRHKEQMSDIEK 75
           Q++I+ HE  + +H++++ +IEK
Sbjct: 62  QQEIRDHEKVLEQHQQRLKEIEK 84


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 227  EKMNTSTRSKRNN*QT*RGT*XKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 69
            E++N + R+      T  G   ++ A    Q++   D I +HK+Q S +EK Q
Sbjct: 1173 EEVNATKRAIEQIQHTMEGKIEEQKAKFSRQVEELHDQIEQHKKQRSQLEKQQ 1225


>Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical
           protein E02H4.5 protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 142 RSRSNDMRMRSGVTKNKCLTLKSPNELDIDSDSFRRPKN 26
           R R+   R  +  +K+KC +LK   +L++ S S + P+N
Sbjct: 58  RQRNIPNRASNWSSKSKCASLKEQTDLNVQSHSQKLPRN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,027
Number of Sequences: 27780
Number of extensions: 176520
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)