Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B05
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 401 e-113
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 75 1e-14
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 75 1e-14
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 44 3e-05
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.32
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.97
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.2
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 9.0
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 9.0
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 401 bits (988), Expect = e-113
Identities = 195/240 (81%), Positives = 216/240 (90%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
GLTV EYFRD EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQER
Sbjct: 282 GLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQER 341
Query: 586 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 407
ITTTKKGSITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS S
Sbjct: 342 ITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKS 401
Query: 406 RIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS 227
R+MDP I+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLS
Sbjct: 402 RMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLS 461
Query: 226 QPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 47
QPF VAEVFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 462 QPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 74.9 bits (176), Expect = 1e-14
Identities = 54/194 (27%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G+T+ EY+RDQ G++V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 338 GITLAEYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYER 396
Query: 586 I-------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 428
+ ++G+++ V A+ P D +DP + T + L + +A+ +P++
Sbjct: 397 AGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSI 456
Query: 427 DPLDSTSRIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLT 263
+ S S+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T
Sbjct: 457 NTSLSYSKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVT 516
Query: 262 VARARKIQR-FLSQ 224
+ A I+ FL Q
Sbjct: 517 LDIAGIIKNDFLQQ 530
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 74.5 bits (175), Expect = 1e-14
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 7/187 (3%)
Frame = -2
Query: 763 LTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 584
L+ E+ Q + VL + ++ + A EVSA +P GY + TD+ T+ ER
Sbjct: 257 LSASEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERA 316
Query: 583 TTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 410
+ GSIT + + +P DD+T P P T + + R + IYP ++ L S
Sbjct: 317 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSL 376
Query: 409 SRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 242
SR+M I +H +V+ + + + + +++G + LS+ED+L + K
Sbjct: 377 SRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKF 436
Query: 241 QR-FLSQ 224
++ F+SQ
Sbjct: 437 EKTFISQ 443
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 43.6 bits (98), Expect = 3e-05
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 4/186 (2%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G + E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 278 GCAMGEWFRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 336
Query: 586 ITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL 419
GS+T++ I D++ P + D L + GI PA++
Sbjct: 337 AAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVG 396
Query: 418 DSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ 239
S SR+ + A VA ++ L Y+ + A G D L + T+ R ++
Sbjct: 397 LSVSRVGSAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLT 453
Query: 238 RFLSQP 221
L QP
Sbjct: 454 ELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 553 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 380
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 379 AEHYNVARGVQKILQDYKSL 320
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.97
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -2
Query: 595 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 473
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 593 LHSTHVSSQSRLISYSRWDTTKQSRHF*SSLSETENV-VNEEQYILSFLITEI 748
LH + SS + Y W + + HF +++E N + ++Q+ SF++ +
Sbjct: 198 LHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIINTKIQKDQFSESFIVDSL 250
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 677 SSLSETENVVNEEQYILSFLITEIFXNSE 763
+ L N +NEE Y+++ L TEIF ++
Sbjct: 705 NELKNESNKINEEYYLMNELNTEIFIQAQ 733
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 577 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 440
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +2
Query: 485 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 646
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 168 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 293
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,311
Number of Sequences: 5004
Number of extensions: 69503
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -