Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_B05
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 436 e-123
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 82 5e-16
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 77 2e-14
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 72 5e-13
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 41 8e-04
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 29 2.8
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 29 3.6
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 8.4
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase subunit
protein 2 protein.
Length = 538
Score = 436 bits (1075), Expect = e-123
Identities = 212/240 (88%), Positives = 224/240 (93%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
GLTV EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG+MQER
Sbjct: 295 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQER 354
Query: 586 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 407
ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR IAEL IYPAVDPLDSTS
Sbjct: 355 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTS 414
Query: 406 RIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS 227
RIMDPN++G HY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RARKIQRFLS
Sbjct: 415 RIMDPNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLS 474
Query: 226 QPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 47
QPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V KA+ LAK
Sbjct: 475 QPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 81.8 bits (193), Expect = 5e-16
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G+T+ EYFRD G +V + D+ R+ +A E+S LG +P+ GY LA + + ER
Sbjct: 319 GITLAEYFRDM-GLNVAMMADSTSRWAEALREISGRLGEMPADSGYPAYLAARLASFYER 377
Query: 586 ITTTK-------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 428
K +GS+T V A+ P D DP + T + L + +A+ +P++
Sbjct: 378 AGRVKCLGSPEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSI 437
Query: 427 DPLDSTSRIM-------DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDK 269
+ L S S M + N E ++ ++ILQ+ + L +I+ ++G L+E DK
Sbjct: 438 NWLISYSEYMRALEEFYEKNY--PEFVSLRTKCKEILQEEEDLSEIVQLVGKASLAESDK 495
Query: 268 LTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYD 122
+T+ ++ + + F +T + + P +T+ G K + G YD
Sbjct: 496 VTL----EVAKIIKDDFLQQNGYTKY-DRFCPFYKTV-GMLKNMIGFYD 538
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Frame = -2
Query: 763 LTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 584
LT E+F G+ VL+ + ++ + +A E+SA +P G+ + TD+ T+ ER
Sbjct: 271 LTAAEFFAYHCGKHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERA 330
Query: 583 TTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 410
K +GSIT + + +P +D+T P P T + + + + + IYP +D L S
Sbjct: 331 GRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSL 390
Query: 409 SRIM----DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 242
SR+M + +H +++ + K +Q + A++G++ LS +D L + K
Sbjct: 391 SRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDDLLYLEFLAKF 450
Query: 241 QR-FLSQ 224
++ F++Q
Sbjct: 451 EKNFIAQ 457
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 71.7 bits (168), Expect = 5e-13
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Frame = -2
Query: 763 LTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 584
LT E+ Q + VL+ + ++ + +A EVSA +P G+ + TD+ T+ ER
Sbjct: 259 LTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 318
Query: 583 TTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 410
+ GSIT + + +P DD+T P P T + + R + IYP ++ L S
Sbjct: 319 GRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSL 378
Query: 409 SRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 242
SR+M I +H +V+ + K +Q + A++G + LS +D L + K
Sbjct: 379 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKF 438
Query: 241 QR-FLSQ 224
++ F++Q
Sbjct: 439 EKNFITQ 445
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 41.1 bits (92), Expect = 8e-04
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G + E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 251 GCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 309
Query: 586 ITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL 419
GS+T++ I A D++ P + D L + G+ PA++
Sbjct: 310 AAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVG 369
Query: 418 DSTSRI 401
S SR+
Sbjct: 370 LSVSRV 375
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 41.1 bits (92), Expect = 8e-04
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G + E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 243 GCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 301
Query: 586 ITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL 419
GS+T++ I A D++ P + D L + G+ PA++
Sbjct: 302 AAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVG 361
Query: 418 DSTSRI 401
S SR+
Sbjct: 362 LSVSRV 367
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 41.1 bits (92), Expect = 8e-04
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = -2
Query: 766 GLTVXEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQER 587
G + E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 278 GCAMGEHFRDN-GKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 336
Query: 586 ITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL 419
GS+T++ I A D++ P + D L + G+ PA++
Sbjct: 337 AAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVG 396
Query: 418 DSTSRI 401
S SR+
Sbjct: 397 LSVSRV 402
>Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical
protein ZK896.7 protein.
Length = 380
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 631 YQPTLATDMG--TMQERITTTKKGSITSVQ-AIYVPADDLTDPAPATTFAHLDATTV 470
Y PT T T+ TTT+ + T+V+ A +T P P TT + TTV
Sbjct: 146 YDPTATTSAAPTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTTTTTV 202
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/112 (23%), Positives = 45/112 (40%)
Frame = -2
Query: 613 TDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYP 434
T+ T +E TTT + T+ P + T+P+P T A +TT + +E
Sbjct: 482 TEAPTTEEPTTTTTEEPTTTTTT-EEPTEAPTEPSPTTVEATEASTTPEASTSSETSTTE 540
Query: 433 AVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSE 278
+P TS + P E + DY L ++ + D++S+
Sbjct: 541 NSEPNQKTSTPVAPEASTVEEETITPIKCVDYGDYCRLWGVLQLCYRDQVSK 592
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 622 TLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 443
T+AT + TTTK + T++ + T P P TT + TT +R IA
Sbjct: 173 TVATTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTT--TVTTTTSAARTIATTT 230
Query: 442 IYPAVDPLDSTSRIMDP 392
V P+ + + P
Sbjct: 231 PIKTVPPVKVFGKAIKP 247
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 625 PTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 446
PT T T + TTT + + P T PAP TT TT+ + A L
Sbjct: 419 PTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTSTTSIPTTIATTTAAPL 478
>U23513-1|ABD94110.1| 294|Caenorhabditis elegans Hypothetical
protein D2021.4a protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -2
Query: 409 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 233
++I D N+I + HYN V+ G + L D K ++ + + D E K+ +A + +F
Sbjct: 56 NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114
Query: 232 LSQ-PF 218
L + PF
Sbjct: 115 LRKIPF 120
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 539 INSL-YRCDGTFLGGGNSFLHSTHVSSQSRLISYS 640
INSL + GTFLG G + HV S S ++S S
Sbjct: 426 INSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLS 460
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = -2
Query: 670 VSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA 491
VS+ ++P QPT+++++G + + T K+ +I V+ P+ P T
Sbjct: 1332 VSSFAPKVPETKINQPTISSNIGDLSK---TEKESTIPRVEV--TPS---ASPESTTVTE 1383
Query: 490 HLDATTVLSRAIAELGIYPA 431
H+DA T S I +G P+
Sbjct: 1384 HIDAET-NSATIPTIGTPPS 1402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,754
Number of Sequences: 27780
Number of extensions: 392851
Number of successful extensions: 1063
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -