Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_B04
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113524-1|AAI13525.1|  578|Homo sapiens IFT74 protein protein.        29   8.6  
AY040325-1|AAK77221.1|  600|Homo sapiens capillary morphogenesis...    29   8.6  
AL356133-4|CAH72643.1|  600|Homo sapiens intraflagellar transpor...    29   8.6  
AK026274-1|BAB15423.1|  310|Homo sapiens protein ( Homo sapiens ...    29   8.6  
AK023707-1|BAB14650.1|  435|Homo sapiens protein ( Homo sapiens ...    29   8.6  

>BC113524-1|AAI13525.1|  578|Homo sapiens IFT74 protein protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  IKKKHQPKLRLKIHKYTF-------NVDYKLT*TLFGLNKTGGVISSXQHVWTFFLXNND 237
           IKK HQ ++ L  H+  F       N++Y+   T    N+T   +++ +  W     NN 
Sbjct: 476 IKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNF 535

Query: 238 SIGDRIRT 261
           ++ + I T
Sbjct: 536 AMKEFIAT 543


>AY040325-1|AAK77221.1|  600|Homo sapiens capillary morphogenesis
           protein-1 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  IKKKHQPKLRLKIHKYTF-------NVDYKLT*TLFGLNKTGGVISSXQHVWTFFLXNND 237
           IKK HQ ++ L  H+  F       N++Y+   T    N+T   +++ +  W     NN 
Sbjct: 498 IKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNF 557

Query: 238 SIGDRIRT 261
           ++ + I T
Sbjct: 558 AMKEFIAT 565


>AL356133-4|CAH72643.1|  600|Homo sapiens intraflagellar transport
           74 homolog (Chlamydomonas) protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  IKKKHQPKLRLKIHKYTF-------NVDYKLT*TLFGLNKTGGVISSXQHVWTFFLXNND 237
           IKK HQ ++ L  H+  F       N++Y+   T    N+T   +++ +  W     NN 
Sbjct: 498 IKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNF 557

Query: 238 SIGDRIRT 261
           ++ + I T
Sbjct: 558 AMKEFIAT 565


>AK026274-1|BAB15423.1|  310|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22621 fis, clone HSI05658. ).
          Length = 310

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  IKKKHQPKLRLKIHKYTF-------NVDYKLT*TLFGLNKTGGVISSXQHVWTFFLXNND 237
           IKK HQ ++ L  H+  F       N++Y+   T    N+T   +++ +  W     NN 
Sbjct: 208 IKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNF 267

Query: 238 SIGDRIRT 261
           ++ + I T
Sbjct: 268 AMKEFIAT 275


>AK023707-1|BAB14650.1|  435|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13645 fis, clone PLACE1011310, weakly similar to
           MYOSIN HEAVY CHAIN, GIZZARD SMOOTH MUSCLE. ).
          Length = 435

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  IKKKHQPKLRLKIHKYTF-------NVDYKLT*TLFGLNKTGGVISSXQHVWTFFLXNND 237
           IKK HQ ++ L  H+  F       N++Y+   T    N+T   +++ +  W     NN 
Sbjct: 333 IKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENETHSQLTNLERKWQHLEQNNF 392

Query: 238 SIGDRIRT 261
           ++ + I T
Sbjct: 393 AMKEFIAT 400


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,961,882
Number of Sequences: 237096
Number of extensions: 1016005
Number of successful extensions: 1360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)